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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • endoplasmic reticulum 4
  • extracellular 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os06t0714500-01 Rice plasma membrane 93.61 93.13
HORVU0Hr1G021880.1 Barley endoplasmic reticulum 88.49 87.82
TraesCS7D01G381400.1 Wheat endoplasmic reticulum 81.84 86.02
TraesCS7B01G287800.1 Wheat golgi 81.84 85.79
TraesCS7A01G384900.1 Wheat endoplasmic reticulum 81.33 85.25
GSMUA_Achr4P05220_001 Banana endoplasmic reticulum 81.59 82.22
GSMUA_Achr11P... Banana endoplasmic reticulum 81.33 81.96
Zm00001d036410_P002 Maize plastid 95.65 78.57
HORVU7Hr1G091480.2 Barley plastid 86.19 78.01
KRH53570 Soybean endoplasmic reticulum, plasma membrane 74.68 74.49
KRH64362 Soybean endoplasmic reticulum, plasma membrane 74.17 73.98
KRH15897 Soybean endoplasmic reticulum 73.15 73.33
PGSC0003DMT400047633 Potato endoplasmic reticulum 70.84 73.28
Solyc03g082630.2.1 Tomato endoplasmic reticulum 70.33 72.94
AT4G27680.1 Thale cress endoplasmic reticulum, plasma membrane 73.91 72.61
Solyc06g053160.2.1 Tomato endoplasmic reticulum, plasma membrane 72.38 72.19
Bra019030.1-P Field mustard endoplasmic reticulum, plasma membrane 72.38 72.19
CDX92836 Canola endoplasmic reticulum, plasma membrane 72.12 72.12
CDY29857 Canola endoplasmic reticulum, plasma membrane 72.12 72.12
CDY71574 Canola endoplasmic reticulum, plasma membrane 72.12 71.94
Bra026316.1-P Field mustard endoplasmic reticulum 71.87 71.68
PGSC0003DMT400013963 Potato endoplasmic reticulum 71.87 71.68
CDY30236 Canola endoplasmic reticulum 71.87 71.68
CDY55344 Canola endoplasmic reticulum 71.87 71.68
CDY19035 Canola endoplasmic reticulum 71.36 71.17
CDY14372 Canola endoplasmic reticulum 71.87 70.78
PGSC0003DMT400031598 Potato endoplasmic reticulum 64.96 70.75
Bra003048.1-P Field mustard endoplasmic reticulum 71.61 70.53
CDY20251 Canola endoplasmic reticulum 72.12 70.15
Solyc08g083020.2.1 Tomato plastid 63.17 68.8
AT5G53540.1 Thale cress endoplasmic reticulum 70.59 68.49
CDY38752 Canola endoplasmic reticulum 67.52 68.39
CDY47077 Canola endoplasmic reticulum, plasma membrane 65.73 66.07
Bra029063.1-P Field mustard endoplasmic reticulum 65.47 65.47
VIT_16s0098g01260.t01 Wine grape endoplasmic reticulum 73.15 37.05
EES01499 Sorghum cytosol 28.64 29.4
OQU87315 Sorghum cytosol 28.64 27.79
EES00346 Sorghum cytosol 27.11 24.31
EER87773 Sorghum cytosol 29.16 23.27
EES01274 Sorghum cytosol 27.37 20.62
KXG19781 Sorghum cytosol 26.34 19.36
EES20020 Sorghum endoplasmic reticulum 41.18 19.12
KXG32842 Sorghum cytosol 37.34 18.84
KXG32925 Sorghum cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole 38.36 18.07
EES00021 Sorghum endoplasmic reticulum 38.87 17.95
KXG23422 Sorghum nucleus 30.18 17.15
EES16128 Sorghum cytosol, plastid 39.39 16.52
OQU79278 Sorghum cytosol, plastid 37.6 15.94
EER92288 Sorghum cytosol 41.18 14.5
EES05524 Sorghum plastid 36.57 14.49
OQU76102 Sorghum mitochondrion 35.81 14.46
OQU90457 Sorghum cytosol, plastid 40.41 14.44
KXG29076 Sorghum plastid 42.2 13.36
Protein Annotations
Gene3D:1.10.8.60Gene3D:3.40.50.300MapMan:35.1UniProt:A0A194YLQ3InterPro:AAA+_ATPaseInterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_coreGO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0016020GO:GO:0016021EnsemblPlants:KXG20883ProteinID:KXG20883ProteinID:KXG20883.1InterPro:P-loop_NTPase
PFAM:PF00004ScanProsite:PS00674PFscan:PS51257PANTHER:PTHR23074PANTHER:PTHR23074:SF20SMART:SM00382
EnsemblPlantsGene:SORBI_3010G265300SUPFAM:SSF52540TMHMM:TMhelixUniParc:UPI00022072E9SEG:seg:
Description
hypothetical protein
Coordinates
chr10:+:60109726..60114854
Molecular Weight (calculated)
43547.3 Da
IEP (calculated)
6.540
GRAVY (calculated)
-0.262
Length
391 amino acids
Sequence
(BLAST)
001: MRSSEPSSRF VQELVLYAAS AALSCLVLFA GLRHLDPNRA ASQKAQQQKK EIAKRLGRPL VSTTPYEDVI ACDVINPDSI DVEFDSIGGL DQVKQALYEL
101: VILPLRRPEL FAFGKLLSPQ KGVLLYGPPG TGKTMLAKAI ARESGAVFIN VRISNLMSKW FGDAQKLVAA VFSLAHKLQP AIIFIDEVDS FLGQRRTTDH
201: EAMTNMKTEF MSLWDGFTTD QNARVMVLAA TNRPSELDEA ILRRFTQIFE IGIPVQSERS KILQVVLKGE NVEPNIDYDH IARLCEGFTG SDILELCKQA
301: AFYPIRELLD NEKNGRQLDK PRPLRQSDLE RALSTSRKGK KAASSGLQSP LWVQPTDSED DQVQNAIFEI SKLMSRIVQN SQSEPQEPSS P
Best Arabidopsis Sequence Match ( AT4G27680.1 )
(BLAST)
001: MGGSSETKIL QELILYAASA AFSCLVLFAG LRHLDPNREA SKKALEHKKE ISKRLGRPLV QTNPYEDVIA CDVINPDHID VEFGSIGGLE TIKQALYELV
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR
Arabidopsis Description
26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T090]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.