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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • mitochondrion 1
  • plastid 2
  • endoplasmic reticulum 3
  • extracellular 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:mitochondrion
iPSORT:plastid
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra026316.1-P Field mustard endoplasmic reticulum 100.0 100.0
CDY55344 Canola endoplasmic reticulum 100.0 100.0
CDY19035 Canola endoplasmic reticulum 97.96 97.96
CDY71574 Canola endoplasmic reticulum, plasma membrane 94.39 94.39
CDY29857 Canola endoplasmic reticulum, plasma membrane 94.13 94.37
CDX92836 Canola endoplasmic reticulum, plasma membrane 93.88 94.12
AT4G27680.1 Thale cress endoplasmic reticulum, plasma membrane 93.11 91.71
KRH53570 Soybean endoplasmic reticulum, plasma membrane 80.36 80.36
Solyc06g053160.2.1 Tomato endoplasmic reticulum, plasma membrane 79.85 79.85
PGSC0003DMT400013963 Potato endoplasmic reticulum 79.85 79.85
KRH64362 Soybean endoplasmic reticulum, plasma membrane 79.85 79.85
CDY14372 Canola endoplasmic reticulum 79.08 78.09
KRH15897 Soybean endoplasmic reticulum 77.3 77.69
PGSC0003DMT400047633 Potato endoplasmic reticulum 74.74 77.51
CDY20251 Canola endoplasmic reticulum 79.08 77.11
Solyc03g082630.2.1 Tomato endoplasmic reticulum 73.72 76.66
CDY38752 Canola endoplasmic reticulum 75.0 76.17
GSMUA_Achr11P... Banana endoplasmic reticulum 73.72 74.48
CDY47077 Canola endoplasmic reticulum, plasma membrane 73.47 74.04
GSMUA_Achr4P05220_001 Banana endoplasmic reticulum 72.45 73.2
TraesCS7D01G381400.1 Wheat endoplasmic reticulum 68.88 72.58
TraesCS7B01G287800.1 Wheat golgi 68.88 72.39
TraesCS7A01G384900.1 Wheat endoplasmic reticulum 68.62 72.12
KXG20883 Sorghum endoplasmic reticulum 71.68 71.87
Os06t0714500-01 Rice plasma membrane 71.94 71.76
HORVU0Hr1G021880.1 Barley endoplasmic reticulum 71.68 71.32
Zm00001d014775_P002 Maize plastid 70.66 70.84
HORVU7Hr1G091480.2 Barley plastid 70.92 64.35
Zm00001d036410_P002 Maize plastid 71.68 59.03
VIT_16s0098g01260.t01 Wine grape endoplasmic reticulum 79.34 40.28
CDY24618 Canola endoplasmic reticulum 23.47 32.74
CDY18925 Canola plastid 27.3 29.56
CDX84641 Canola cytosol 27.81 29.07
CDY17260 Canola cytosol 28.32 28.98
CDX84306 Canola cytosol 28.32 28.76
CDX79566 Canola cytosol 27.3 28.46
CDX92656 Canola cytosol 29.85 27.15
CDX93578 Canola cytosol 28.06 25.58
CDX95077 Canola cytosol 28.06 25.52
CDX71438 Canola cytosol 27.04 24.71
CDY04504 Canola cytosol 27.04 24.54
CDY31186 Canola cytosol 27.04 24.42
CDX83275 Canola cytosol 26.79 24.25
CDX74745 Canola cytosol 28.06 23.16
CDX96166 Canola cytosol 38.01 21.94
CDY37046 Canola cytosol 28.57 21.92
CDY37590 Canola cytosol 27.04 20.74
CDY49165 Canola extracellular, plasma membrane 41.07 20.61
CDX79393 Canola cytosol 27.81 20.6
CDY38662 Canola cytosol 27.04 20.54
CDY57698 Canola cytosol 27.81 20.53
CDY19639 Canola extracellular, vacuole 41.07 20.05
CDY56163 Canola extracellular, vacuole 40.31 19.63
CDY38192 Canola plasma membrane 41.58 19.61
CDY08360 Canola endoplasmic reticulum 41.58 19.61
CDY51824 Canola extracellular, plasma membrane 40.31 19.6
CDY34176 Canola plastid 29.59 17.9
CDY28494 Canola plastid 29.34 17.75
CDX91317 Canola plastid 42.6 15.78
CDY03591 Canola cytosol, mitochondrion, plastid 39.54 15.52
CDY45052 Canola mitochondrion 39.54 15.52
CDX90936 Canola plastid 42.09 15.08
CDY32485 Canola plastid 42.09 14.97
CDY33415 Canola cytosol, mitochondrion 38.52 14.86
CDY27380 Canola nucleus 27.81 14.69
CDX89214 Canola extracellular, plasma membrane 28.32 14.64
CDX97266 Canola plastid 42.09 14.59
CDY42204 Canola cytosol, mitochondrion, plastid 38.27 14.41
CDX89933 Canola plastid 41.84 14.19
CDY50381 Canola plastid 42.6 13.91
CDY18018 Canola plastid 42.35 13.61
CDY18129 Canola cytosol, plastid 42.09 13.59
CDY22053 Canola plastid 42.35 13.51
CDY19014 Canola endoplasmic reticulum, extracellular 22.19 12.12
CDY29873 Canola endoplasmic reticulum, extracellular, plasma membrane 21.17 11.84
CDX92857 Canola endoplasmic reticulum, extracellular, plasma membrane 21.17 11.79
CDX89934 Canola cytosol 1.53 2.3
Protein Annotations
Gene3D:1.10.8.60Gene3D:3.40.50.300MapMan:35.1GO:A0A078GXK1UniProt:A0A078GXK1InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreEnsemblPlants:CDY30236ProteinID:CDY30236ProteinID:CDY30236.1ProteinID:CDY55344.1
GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0016020
GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00044865001InterPro:P-loop_NTPasePFAM:PF00004ScanProsite:PS00674PANTHER:PTHR23074
PANTHER:PTHR23074:SF20SMART:SM00382SUPFAM:SSF52540TMHMM:TMhelixUniParc:UPI0002545921:
Description
BnaA03g49340DBnaA03g49340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXK1]
Coordinates
chrLK032250:+:476690..478647
Molecular Weight (calculated)
43393.3 Da
IEP (calculated)
5.979
GRAVY (calculated)
-0.226
Length
392 amino acids
Sequence
(BLAST)
001: MGGGSSETKI LQELILYAAS AAFSCLVLFA GLRHLDPNRE ASKKALEHKK EISKRLGRPL IHTTPYEDVI ACDVINPDHI DVEFGSIGGL ETIKEALYEL
101: VILPLKRPEL FAYGKLLGPQ KGVLLYGPPG TGKTMLAKAI AKESGAVFIN VRVSNLMSKW FGDAQKLVSA VFSLAYKLQP AIIFIDEVDS FLGQRRSTDH
201: EAMANMKTEF MALWDGFSTD PNARVMVLAA TNRPSELDEA ILRRLPQAFE IGMPDRKERA EILKVTLKGE RVEPDIDYDH VARLCEGYTG SDIFELCKKA
301: AYFPIREILE EERKGRPCPA ARPLSQLDLE KVLATSKKTQ VAAGEYCGLR GSREPDEVEA AISGISKLLV SQFINLQSGS QDSRHRDPEE DN
Best Arabidopsis Sequence Match ( AT4G27680.1 )
(BLAST)
001: MGGSSETKIL QELILYAASA AFSCLVLFAG LRHLDPNREA SKKALEHKKE ISKRLGRPLV QTNPYEDVIA CDVINPDHID VEFGSIGGLE TIKQALYELV
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR
Arabidopsis Description
26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T090]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.