Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29857 | Canola | endoplasmic reticulum, plasma membrane | 99.74 | 99.74 |
| Bra019030.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 98.72 | 98.47 |
| CDY71574 | Canola | endoplasmic reticulum, plasma membrane | 98.47 | 98.21 |
| CDY30236 | Canola | endoplasmic reticulum | 94.12 | 93.88 |
| CDY55344 | Canola | endoplasmic reticulum | 94.12 | 93.88 |
| CDY19035 | Canola | endoplasmic reticulum | 93.09 | 92.86 |
| AT4G27680.1 | Thale cress | endoplasmic reticulum, plasma membrane | 93.09 | 91.46 |
| KRH53570 | Soybean | endoplasmic reticulum, plasma membrane | 81.59 | 81.38 |
| KRH64362 | Soybean | endoplasmic reticulum, plasma membrane | 81.07 | 80.87 |
| PGSC0003DMT400013963 | Potato | endoplasmic reticulum | 80.31 | 80.1 |
| Solyc06g053160.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 80.31 | 80.1 |
| CDY14372 | Canola | endoplasmic reticulum | 79.54 | 78.34 |
| Solyc03g082630.2.1 | Tomato | endoplasmic reticulum | 75.19 | 77.98 |
| CDY38752 | Canola | endoplasmic reticulum | 76.98 | 77.98 |
| PGSC0003DMT400047633 | Potato | endoplasmic reticulum | 75.19 | 77.78 |
| KRH15897 | Soybean | endoplasmic reticulum | 77.24 | 77.44 |
| CDY20251 | Canola | endoplasmic reticulum | 79.28 | 77.11 |
| CDY47077 | Canola | endoplasmic reticulum, plasma membrane | 74.94 | 75.32 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum | 74.42 | 75.0 |
| GSMUA_Achr4P05220_001 | Banana | endoplasmic reticulum | 72.63 | 73.2 |
| KXG20883 | Sorghum | endoplasmic reticulum | 72.12 | 72.12 |
| TraesCS7D01G381400.1 | Wheat | endoplasmic reticulum | 68.03 | 71.51 |
| TraesCS7B01G287800.1 | Wheat | golgi | 68.03 | 71.31 |
| Os06t0714500-01 | Rice | plasma membrane | 71.61 | 71.25 |
| Zm00001d014775_P002 | Maize | plastid | 71.1 | 71.1 |
| TraesCS7A01G384900.1 | Wheat | endoplasmic reticulum | 67.77 | 71.05 |
| HORVU0Hr1G021880.1 | Barley | endoplasmic reticulum | 71.36 | 70.81 |
| HORVU7Hr1G091480.2 | Barley | plastid | 70.33 | 63.66 |
| Zm00001d036410_P002 | Maize | plastid | 71.36 | 58.61 |
| VIT_16s0098g01260.t01 | Wine grape | endoplasmic reticulum | 79.28 | 40.16 |
| CDY24618 | Canola | endoplasmic reticulum | 23.53 | 32.74 |
| CDY18925 | Canola | plastid | 27.62 | 29.83 |
| CDX84641 | Canola | cytosol | 27.88 | 29.07 |
| CDY17260 | Canola | cytosol | 28.39 | 28.98 |
| CDX84306 | Canola | cytosol | 28.39 | 28.76 |
| CDX79566 | Canola | cytosol | 27.37 | 28.46 |
| CDX92656 | Canola | cytosol | 30.18 | 27.38 |
| CDX93578 | Canola | cytosol | 28.13 | 25.58 |
| CDX95077 | Canola | cytosol | 28.13 | 25.52 |
| CDX71438 | Canola | cytosol | 27.11 | 24.71 |
| CDY04504 | Canola | cytosol | 27.11 | 24.54 |
| CDY31186 | Canola | cytosol | 27.11 | 24.42 |
| CDX83275 | Canola | cytosol | 26.85 | 24.25 |
| CDX74745 | Canola | cytosol | 28.13 | 23.16 |
| CDX96166 | Canola | cytosol | 38.36 | 22.09 |
| CDY37046 | Canola | cytosol | 28.39 | 21.72 |
| CDY49165 | Canola | extracellular, plasma membrane | 41.94 | 21.0 |
| CDY37590 | Canola | cytosol | 26.85 | 20.55 |
| CDY19639 | Canola | extracellular, vacuole | 41.94 | 20.42 |
| CDY38662 | Canola | cytosol | 26.85 | 20.35 |
| CDX79393 | Canola | cytosol | 27.37 | 20.23 |
| CDY57698 | Canola | cytosol | 27.37 | 20.15 |
| CDY56163 | Canola | extracellular, vacuole | 41.18 | 20.0 |
| CDY51824 | Canola | extracellular, plasma membrane | 41.18 | 19.98 |
| CDY38192 | Canola | plasma membrane | 41.69 | 19.61 |
| CDY08360 | Canola | endoplasmic reticulum | 41.69 | 19.61 |
| CDY34176 | Canola | plastid | 29.41 | 17.75 |
| CDY28494 | Canola | plastid | 29.16 | 17.59 |
| CDX91317 | Canola | plastid | 42.71 | 15.78 |
| CDY03591 | Canola | cytosol, mitochondrion, plastid | 39.64 | 15.52 |
| CDY45052 | Canola | mitochondrion | 39.64 | 15.52 |
| CDX90936 | Canola | plastid | 42.46 | 15.17 |
| CDY32485 | Canola | plastid | 42.46 | 15.06 |
| CDX89214 | Canola | extracellular, plasma membrane | 29.16 | 15.04 |
| CDY33415 | Canola | cytosol, mitochondrion | 38.87 | 14.96 |
| CDX97266 | Canola | plastid | 42.46 | 14.68 |
| CDY27380 | Canola | nucleus | 27.62 | 14.56 |
| CDY42204 | Canola | cytosol, mitochondrion, plastid | 38.62 | 14.51 |
| CDX89933 | Canola | plastid | 42.2 | 14.27 |
| CDY50381 | Canola | plastid | 42.97 | 13.99 |
| CDY18018 | Canola | plastid | 42.71 | 13.69 |
| CDY18129 | Canola | cytosol, plastid | 42.46 | 13.67 |
| CDY22053 | Canola | plastid | 42.71 | 13.59 |
| CDY19014 | Canola | endoplasmic reticulum, extracellular | 23.02 | 12.53 |
| CDY29873 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 22.25 | 12.41 |
| CDX92857 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 21.99 | 12.22 |
| CDX89934 | Canola | cytosol | 1.53 | 2.3 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078DU84 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS |
| InterPro:ATPase_AAA_core | EnsemblPlants:CDX92836 | ProteinID:CDX92836 | ProteinID:CDX92836.1 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00154669001 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 |
| PANTHER:PTHR23074 | PANTHER:PTHR23074:SF20 | SMART:SM00382 | SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI0004EDFE0A |
Description
BnaC07g40940D
Coordinates
chrLK031873:+:1053633..1055421
Molecular Weight (calculated)
43250.2 Da
IEP (calculated)
5.819
GRAVY (calculated)
-0.194
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSSETKIL QELILYAASA ALSCLVLFAG LKHLDPNREA SKKALENKKE ISKRLGRPLI HTNPYEDVIA CDVINPDHID VEFGSIGGLE TIKQSLYELV
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVAAV FSLAYKLQPA IIFIDEVDSF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP NARVMVLAAT NRPSELDEAI LRRLPQAFEI GMPDRKERAE ILKVTLKGES VEPDIDFDHV ARLCQGYTGS DIFELCKKAA
301: YFPIREVLEE ERKGRPCPVP RPLSQLDLEK VLATSKKTQV AAGEYSGLRV SREPDEVQAA ISGISKLLVS QFINLQSDSQ GSWQREPEED S
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVAAV FSLAYKLQPA IIFIDEVDSF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP NARVMVLAAT NRPSELDEAI LRRLPQAFEI GMPDRKERAE ILKVTLKGES VEPDIDFDHV ARLCQGYTGS DIFELCKKAA
301: YFPIREVLEE ERKGRPCPVP RPLSQLDLEK VLATSKKTQV AAGEYSGLRV SREPDEVQAA ISGISKLLVS QFINLQSDSQ GSWQREPEED S
001: MGGSSETKIL QELILYAASA AFSCLVLFAG LRHLDPNREA SKKALEHKKE ISKRLGRPLV QTNPYEDVIA CDVINPDHID VEFGSIGGLE TIKQALYELV
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR
Arabidopsis Description
26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T090]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.