Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 5
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 4
- vacuole 4
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026293.1-P | Field mustard | endoplasmic reticulum, extracellular | 90.99 | 91.31 |
| CDX89214 | Canola | extracellular, plasma membrane | 82.81 | 90.9 |
| Bra024235.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 89.66 | 90.86 |
| CDY19014 | Canola | endoplasmic reticulum, extracellular | 77.28 | 89.55 |
| CDY29873 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 74.88 | 88.87 |
| CDX92857 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 75.12 | 88.78 |
| AT5G52882.1 | Thale cress | extracellular, vacuole | 84.01 | 84.32 |
| KRH08796 | Soybean | cytosol | 17.07 | 81.61 |
| KRH38312 | Soybean | endoplasmic reticulum | 70.19 | 71.48 |
| Solyc03g007760.2.1 | Tomato | endoplasmic reticulum | 70.19 | 70.7 |
| KRH08780 | Soybean | extracellular, plasma membrane | 69.35 | 70.62 |
| PGSC0003DMT400051401 | Potato | endoplasmic reticulum | 69.95 | 70.12 |
| VIT_16s0050g01850.t01 | Wine grape | endoplasmic reticulum, vacuole | 70.43 | 70.01 |
| AT1G64110.2 | Thale cress | cytosol | 68.39 | 68.64 |
| KRH08789 | Soybean | cytosol | 27.52 | 68.36 |
| Os01t0226400-01 | Rice | plasma membrane | 66.35 | 65.71 |
| GSMUA_Achr9P05420_001 | Banana | cytosol, mitochondrion | 51.44 | 65.64 |
| HORVU3Hr1G030770.20 | Barley | cytosol, vacuole | 65.5 | 64.8 |
| TraesCS3D01G159200.1 | Wheat | cytosol, vacuole | 65.02 | 64.71 |
| Zm00001d008983_P001 | Maize | vacuole | 65.5 | 64.42 |
| TraesCS3A01G151300.2 | Wheat | cytosol, vacuole | 65.02 | 64.4 |
| TraesCS3B01G178200.1 | Wheat | cytosol, vacuole | 64.9 | 64.29 |
| Zm00001d039315_P003 | Maize | vacuole | 64.9 | 64.21 |
| EES00021 | Sorghum | endoplasmic reticulum | 65.26 | 64.11 |
| AT4G27680.1 | Thale cress | endoplasmic reticulum, plasma membrane | 18.75 | 39.2 |
| AT5G53540.1 | Thale cress | endoplasmic reticulum | 17.91 | 36.97 |
| AT2G34560.2 | Thale cress | cytosol | 14.78 | 31.3 |
| AT2G27600.1 | Thale cress | cytosol | 14.54 | 27.82 |
| AT2G45500.5 | Thale cress | cytosol | 16.47 | 27.57 |
| AT1G62130.1 | Thale cress | cytosol, plastid | 34.25 | 27.32 |
| AT4G24860.1 | Thale cress | cytosol, plastid | 36.66 | 27.18 |
| AT1G80350.1 | Thale cress | cytosol | 16.59 | 26.39 |
| AT3G19740.1 | Thale cress | cytosol, mitochondrion, plastid | 31.49 | 26.38 |
| AT1G02890.1 | Thale cress | plastid | 39.18 | 26.16 |
| AT1G50140.1 | Thale cress | mitochondrion | 31.49 | 26.12 |
| AT4G02480.1 | Thale cress | plastid | 39.3 | 25.85 |
| AT3G27120.1 | Thale cress | nucleus | 18.75 | 22.94 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:828913 | UniProt:A0A1P8B5P0 | InterPro:AAA+_ATPase |
| ProteinID:ANM66910.1 | ArrayExpress:AT4G28000 | EnsemblPlantsGene:AT4G28000 | RefSeq:AT4G28000 | TAIR:AT4G28000 | RefSeq:AT4G28000-TAIR-G |
| EnsemblPlants:AT4G28000.2 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | Unigene:At.54531 | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | RefSeq:NP_001328776.1 |
| InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 | PANTHER:PTHR23074 | PANTHER:PTHR23074:SF98 | SMART:SM00382 |
| SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI000848F5DE | SEG:seg | : | : |
Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G28000]
Coordinates
chr4:+:13925338..13929527
Molecular Weight (calculated)
92658.5 Da
IEP (calculated)
5.341
GRAVY (calculated)
-0.410
Length
832 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQKSVLFSA LGVGVGLGIG LASGQSLGKW ANGSISAEDG LTGEKIEQEL VRQIVDGRES SVTFDEFPYY LSEKTRLLLT SAAYVHLKQS DISKHTRNLA
101: PGSKAILLSG PAEFYQQMLA KALAHYFESK LLLLDITDFS IKIQSKYGCV KKEPSHKRSI SELTMDKMSN LMGSISVLSQ KEATRGTLRR HTSGNDLHSR
201: GFDVTSQPPR LKRNASAASD MSSISSRSAT SVSASSKRSA NLCFDERLFL QSLYKVLVSI SETNPIIIYL RDVEKLCQSE RFYKLFQRLL TKLSGPVLVL
301: GSRLLEPEDD CQEVGEGISA LFPYNIEIRP PEDENQLMSW KTRFEDDMKV IQFQDNKNHI AEVLAANDLE CDDLGSICHA DTMFLSSHIE EIVVSAISYH
401: LMNNKEPEYK NGRLVISSNS LSHGLNILQE GQGCFEDSLK LDTNIDSKVE EGEGITKSES KSETTVPENK NESDTSIPAA KNECPLPPKA PVHEVAPDNE
501: FEKRIRPEVI PANEIGVTFA DIGSLDETKE SLQELVMLPL RRPDLFKGGL LKPCRGILLF GPPGTGKTMM AKAIANEAGA SFINVSMSTI TSKWFGEDEK
601: NVRALFTLAA KVSPTIIFVD EVDSMLGQRT RVGEHEAMRK IKNEFMTHWD GLMSNAGDRI LVLAATNRPF DLDEAIIRRF ERRIMVGLPS VESREKILRT
701: LLSKEKTENL DFQELAQMTD GYSGSDLKNF CTTAAYRPVR ELIKQECLKD QERRKREEAE KNSEEGSEAK EEVSEERGIT LRPLSMEDMK VAKSQVAASF
801: AAEGAGMNEL KQWNDLYGEG GSRKKEQLSY FL
101: PGSKAILLSG PAEFYQQMLA KALAHYFESK LLLLDITDFS IKIQSKYGCV KKEPSHKRSI SELTMDKMSN LMGSISVLSQ KEATRGTLRR HTSGNDLHSR
201: GFDVTSQPPR LKRNASAASD MSSISSRSAT SVSASSKRSA NLCFDERLFL QSLYKVLVSI SETNPIIIYL RDVEKLCQSE RFYKLFQRLL TKLSGPVLVL
301: GSRLLEPEDD CQEVGEGISA LFPYNIEIRP PEDENQLMSW KTRFEDDMKV IQFQDNKNHI AEVLAANDLE CDDLGSICHA DTMFLSSHIE EIVVSAISYH
401: LMNNKEPEYK NGRLVISSNS LSHGLNILQE GQGCFEDSLK LDTNIDSKVE EGEGITKSES KSETTVPENK NESDTSIPAA KNECPLPPKA PVHEVAPDNE
501: FEKRIRPEVI PANEIGVTFA DIGSLDETKE SLQELVMLPL RRPDLFKGGL LKPCRGILLF GPPGTGKTMM AKAIANEAGA SFINVSMSTI TSKWFGEDEK
601: NVRALFTLAA KVSPTIIFVD EVDSMLGQRT RVGEHEAMRK IKNEFMTHWD GLMSNAGDRI LVLAATNRPF DLDEAIIRRF ERRIMVGLPS VESREKILRT
701: LLSKEKTENL DFQELAQMTD GYSGSDLKNF CTTAAYRPVR ELIKQECLKD QERRKREEAE KNSEEGSEAK EEVSEERGIT LRPLSMEDMK VAKSQVAASF
801: AAEGAGMNEL KQWNDLYGEG GSRKKEQLSY FL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.