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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, plastid

Predictor Summary:
  • nucleus 2
  • plastid 3
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH57222 Soybean cytosol 36.91 61.4
Solyc06g071980.2.1 Tomato cytosol 39.31 53.95
CDX92656 Canola cytosol 21.86 52.9
AT4G24860.1 Thale cress cytosol, plastid 56.66 52.67
VIT_17s0000g01550.t01 Wine grape cytosol, plastid 55.03 47.2
Solyc03g110900.2.1 Tomato nucleus 52.35 45.69
Solyc06g072000.1.1 Tomato plastid 44.87 45.57
KRH63756 Soybean cytosol, plastid 53.79 45.46
KRH54195 Soybean plastid 53.88 45.4
KRH03951 Soybean nucleus 53.21 45.34
AT1G02890.1 Thale cress plastid 46.69 39.09
AT4G02480.1 Thale cress plastid 46.98 38.74
AT4G27680.1 Thale cress endoplasmic reticulum, plasma membrane 13.9 36.43
AT4G28000.2 Thale cress extracellular 27.32 34.25
AT5G52882.1 Thale cress extracellular, vacuole 27.04 34.02
AT5G53540.1 Thale cress endoplasmic reticulum 13.14 33.99
AT1G64110.2 Thale cress cytosol 26.94 33.9
AT2G34560.2 Thale cress cytosol 10.83 28.75
AT3G19740.1 Thale cress cytosol, mitochondrion, plastid 25.5 26.79
AT1G50140.1 Thale cress mitochondrion 25.41 26.42
AT2G45500.5 Thale cress cytosol 12.27 25.75
AT1G80350.1 Thale cress cytosol 12.18 24.28
AT2G27600.1 Thale cress cytosol 10.07 24.14
AT3G27120.1 Thale cress nucleus 13.42 20.59
Protein Annotations
Gene3D:1.10.8.60Gene3D:2.60.200.20Gene3D:3.40.50.300MapMan:35.1EntrezGene:842509InterPro:AAA+_ATPase
ProteinID:AEE33926.1ArrayExpress:AT1G62130EnsemblPlantsGene:AT1G62130RefSeq:AT1G62130TAIR:AT1G62130RefSeq:AT1G62130-TAIR-G
EnsemblPlants:AT1G62130.1TAIR:AT1G62130.1InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreUnigene:At.52318UniProt:F4HX45
InterPro:FHA_domGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005515
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0016787
GO:GO:0016887InterPro:IPR000253RefSeq:NP_176404.3InterPro:P-loop_NTPasePFAM:PF00004PO:PO:0000013
PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007103PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020100
PO:PO:0025022ScanProsite:PS00674PANTHER:PTHR23074PANTHER:PTHR23074:SF84SMART:SM00382InterPro:SMAD_FHA_dom_sf
SUPFAM:SSF49879SUPFAM:SSF52540UniParc:UPI0001E92ABCSEG:seg::
Description
AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:F4HX45]
Coordinates
chr1:-:22962340..22968998
Molecular Weight (calculated)
114917.0 Da
IEP (calculated)
6.092
GRAVY (calculated)
-0.267
Length
1043 amino acids
Sequence
(BLAST)
0001: MVSPGRSESI SGENNTTLPD GSSGKRIPPS SPSGDKSPSS KRSKLGDGSG ASTDSSEAPT SEDAKIAEGL TPTLPDSSFS GWTYRHCTFK TPWCKLLSQS
0101: AKQQNLCLYE SSCTFGSCLT SDFTLHDRNL GAFLCKITRI QRNGNVVAVL DITGTGGPLR INKAFVIKNV SHELHSGDEL VFGLNRSYAF IYQQMSKVTV
0201: ISGGEQVPAG KFLQLEREAR DPSRVSMLAS LEISRENPAT SGVQEGVEGY FPVNNQSNKA ADSGVVISHN QDSKMEILDE ENEVTRNRRA QQAAKFREYI
0301: RAGIVDGKRL EFSFENFPYY LSEHTKYVLL AVSDMHLNKM NIGYAPYASD LTILNPRILL SGPAGSEIYQ EILAKALANS FNAKLLIFDS NPILGVMTAK
0401: EFESLMNGPA LIDRGKSLDL SSGQGDSSIP SPATSPRSFG TPISGLLILH WGKTLAGDRV RFFGDELCPG LPTSRGPPYG FIGKVLLVFD ENPSAKVGVR
0501: FENPVPDGVD LGQLCEMGHG FFCSATDLQF ESSASDDLNE LLVTKLFEVA HDQSRTCPVI IFLKDAEKYF VGNSHFCSAF KSKLEVISDN LIVICSQTHS
0601: DNPKEKGIGR LTDLFVNKVT IYMPQGEELL KSWKYHLDRD AETLKMKANY NHLRMVLGRC GIECEGIETL CMKDLTLRRD SAEKIIGWAL SHHIKSNPGA
0701: DPDVRVILSL ESLKCGIELL EIESKKSLKD IVTENTFEIS DIIPPSEIGV TFDDIGALEN VKDTLKELVM LPFQWPELFC KGQLTKPCNG ILLFGPSGTG
0801: KTMLAKAVAT EAGANLINMS MSRWFSEGEK YVKAVFSLAS KISPSIIFLD EVESMLHRYR LKTKNEFIIN WDGLRTNEKE RVLVLAATNR PFDLDEAVIR
0901: RLPHRLMVGL PDARSRSKIL KVILSKEDLS PDFDIDEVAS MTNGYSGNDL KNLCVTAARR RIIEIVEKEK SERDAAVAEG RVPPAGSGGS DLRVLKMEDF
1001: RNALELVSMS ISSKSVNMTA LRQWNEDYGE GGSRRNESFS QYV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.