Factsheet for PGSC0003DMT400068352

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007475
PGSC0003DMT400011724
PGSC0003DMT400016336
PGSC0003DMT400019062
PGSC0003DMT400020443
PGSC0003DMT400029044
PGSC0003DMT400039777
PGSC0003DMT400052958
PGSC0003DMT400052998
PGSC0003DMT400069822
PGSC0003DMT400073132
PGSC0003DMT400078266
PGSC0003DMT400080484

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47100.1	PGSC0003DMT400080484	AT1G30270.1	14730064
AT5G47100.1	PGSC0003DMT400080484	AT1G30270.1	16814720
AT5G47100.1	PGSC0003DMT400080484	AT1G30270.1	17898163
AT5G47100.1	PGSC0003DMT400011724	AT1G48260.1	14730064
AT5G47100.1	PGSC0003DMT400069822	AT1G48260.1	14730064
AT5G47100.1	PGSC0003DMT400019062	AT2G25090.1	14730064
AT5G47100.1	PGSC0003DMT400019062	AT2G25090.1	17898163
AT5G47100.1	PGSC0003DMT400052998	AT2G30360.1	14730064
AT5G47100.1	PGSC0003DMT400078266	AT2G30360.1	14730064
AT5G47100.1	PGSC0003DMT400052998	AT2G30360.1	21798944
AT5G47100.1	PGSC0003DMT400078266	AT2G30360.1	21798944
AT5G47100.1	PGSC0003DMT400039777	AT3G15090.1	21798944
AT5G47100.1	PGSC0003DMT400011724	AT3G17510.1	14730064
AT5G47100.1	PGSC0003DMT400069822	AT3G17510.1	14730064
AT5G47100.1	PGSC0003DMT400011724	AT3G17510.1	17092313
AT5G47100.1	PGSC0003DMT400069822	AT3G17510.1	17092313
AT5G47100.1	PGSC0003DMT400073132	AT4G18700.1	14730064
AT5G47100.1	PGSC0003DMT400016336	AT4G24400.1	14730064
AT5G47100.1	PGSC0003DMT400020443	AT4G30960.1	17898163
AT5G47100.1	PGSC0003DMT400029044	AT4G30960.1	17898163
AT5G47100.1	PGSC0003DMT400019062	AT5G10930.1	14730064
AT5G47100.1	PGSC0003DMT400007475	AT5G35410.1	14730064
AT5G47100.1	PGSC0003DMT400052958	AT5G58380.1	14730064

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g060980.1.1	Tomato	cytosol, mitochondrion	88.37	88.37
PGSC0003DMT400011576	Potato	cytosol	84.19	84.98
AT5G47100.1	Thale cress	cytosol	80.93	81.69
Bra012655.1-P	Field mustard	cytosol	80.93	81.69
Bra022104.1-P	Field mustard	cytosol	80.93	81.69
CDX90465	Canola	cytosol	80.93	81.69
CDY28977	Canola	cytosol	80.93	81.69
Bra040169.1-P	Field mustard	cytosol	80.47	81.22
CDY09616	Canola	cytosol	80.47	81.22
Os10t0564800-01	Rice	plasma membrane	80.47	81.22
CDY38412	Canola	cytosol	80.47	81.22
EER94470	Sorghum	cytosol	80.47	81.22
Zm00001d029976_P004	Maize	cytosol, mitochondrion	80.0	80.75
CDY25987	Canola	cytosol	80.0	80.75
Bra017504.1-P	Field mustard	cytosol	80.0	80.75
CDY69850	Canola	cytosol	80.0	80.75
CDX78784	Canola	cytosol	80.0	80.75
CDY40580	Canola	cytosol	79.53	80.28
HORVU1Hr1G055300.1	Barley	cytosol	80.0	80.0
TraesCSU01G178500.1	Wheat	cytosol	80.0	80.0
TraesCS1B01G229300.1	Wheat	cytosol	80.0	80.0
TraesCS1A01G215800.1	Wheat	cytosol	80.0	80.0
GSMUA_AchrUn_...	Banana	cytosol	78.14	78.87
GSMUA_Achr4P30070_001	Banana	cytosol	77.21	77.93
GSMUA_Achr4P26350_001	Banana	cytosol	76.28	77.0
KRH57533	Soybean	mitochondrion	75.35	76.06
TraesCSU01G129500.1	Wheat	cytosol, mitochondrion	74.88	74.54
HORVU4Hr1G090270.10	Barley	cytosol	74.42	73.73
TraesCS4B01G379200.1	Wheat	cytosol	69.3	73.4
KRH28207	Soybean	cytosol	72.09	73.11
TraesCS5A01G545500.2	Wheat	cytosol	73.02	73.02
KRH04244	Soybean	cytosol	68.37	67.12
AT4G17615.3	Thale cress	cytosol	75.35	64.29
PGSC0003DMT400050430	Potato	cytosol	63.72	64.02
PGSC0003DMT400023568	Potato	cytosol	62.79	63.08
Zm00001d000046_P001	Maize	cytosol	51.63	63.07
PGSC0003DMT400057342	Potato	cytosol, extracellular	61.4	60.27
PGSC0003DMT400037245	Potato	cytosol	61.4	59.46
PGSC0003DMT400052805	Potato	cytosol	70.7	58.24
PGSC0003DMT400076653	Potato	cytosol	60.47	58.04
PGSC0003DMT400014960	Potato	cytosol	31.16	56.3
PGSC0003DMT400046089	Potato	cytosol	47.44	52.31
PGSC0003DMT400088667	Potato	cytosol	53.95	51.79
PGSC0003DMT400014962	Potato	cytosol	20.93	45.92
PGSC0003DMT400076980	Potato	mitochondrion	54.42	40.34

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:102582923	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	UniProt:M1CIX5	PFAM:PF13499
PFAM:PF13833	EnsemblPlantsGene:PGSC0003DMG400026580	PGSC:PGSC0003DMG400026580	EnsemblPlants:PGSC0003DMT400068352	PRINTS:PR00450	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR23056	PANTHER:PTHR23056:SF41	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000294BF1F
RefSeq:XP_006361193.1	:	:	:	:	:

Description

Calcineurin B 01 [Source:PGSC_GENE;Acc:PGSC0003DMG400026580]

Coordinates

chr6:+:44283937..44286430

Molecular Weight (calculated)

24474.1 Da

IEP (calculated)

4.337

GRAVY (calculated)

-0.130

Length

215 amino acids

Sequence
(BLAST)

001: MGCFHSTAAK KFPGHENPVV LASETTFSVS EVEALFELFK IISSSVIDDG LISKEEFQLA LFKNKQKENL FANRIFDLFD VKQKGVIDFG DFVRALNVFH
101: PNAPQEEKIN FSFRLYDMDG TGFIERQEVK QMLIALLGES EMTLDDETVE IILDKTFLEA DSNQDGKIDL SEWHDFVGRN PSLLKIMTLP YLRDITTTFP
201: SFVFHSEVDE AATQL

Best Arabidopsis Sequence Match ( AT4G17615.4 )
(BLAST)

001: MGCFHSKAAK EFRGHEDPVK LASETAFSVS EVEALFELFK SISSSVVDDG LINKEEFQLA LFKSRKRENI FANRIFDMFD VKRKGVIDFG DFVRSLNVFH
101: PNASLEDKID FTFRLYDMDC TGYIERQEVK QMLIALLCES EMKLADETIE IILDKTFEDA DVNQDGKIDK LEWSDFVNKN PSLLKIMTLP YLRDITTTFP
201: SFVFHSEVDE IAT

Arabidopsis Description

CBL1calcineurin B-like protein 1 [Source:TAIR;Acc:AT4G17615]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.