Factsheet for Solyc06g060980.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g021440.2.1
Solyc02g072530.1.1
Solyc04g076810.2.1
Solyc05g053210.2.1
Solyc06g007430.1.1
Solyc06g007440.2.1
Solyc06g082440.1.1
Solyc07g005440.1.1
Solyc08g067310.1.1
Solyc12g009570.1.1
Solyc12g010130.1.1
Solyc12g014050.1.1
Solyc12g098910.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47100.1	Solyc02g021440.2.1	AT1G30270.1	14730064
AT5G47100.1	Solyc02g021440.2.1	AT1G30270.1	16814720
AT5G47100.1	Solyc02g021440.2.1	AT1G30270.1	17898163
AT5G47100.1	Solyc05g053210.2.1	AT1G48260.1	14730064
AT5G47100.1	Solyc12g098910.1.1	AT1G48260.1	14730064
AT5G47100.1	Solyc08g067310.1.1	AT2G25090.1	14730064
AT5G47100.1	Solyc08g067310.1.1	AT2G25090.1	17898163
AT5G47100.1	Solyc06g007440.2.1	AT2G30360.1	14730064
AT5G47100.1	Solyc06g082440.1.1	AT2G30360.1	14730064
AT5G47100.1	Solyc06g007440.2.1	AT2G30360.1	21798944
AT5G47100.1	Solyc06g082440.1.1	AT2G30360.1	21798944
AT5G47100.1	Solyc12g014050.1.1	AT3G15090.1	21798944
AT5G47100.1	Solyc05g053210.2.1	AT3G17510.1	14730064
AT5G47100.1	Solyc12g098910.1.1	AT3G17510.1	14730064
AT5G47100.1	Solyc05g053210.2.1	AT3G17510.1	17092313
AT5G47100.1	Solyc12g098910.1.1	AT3G17510.1	17092313
AT5G47100.1	Solyc02g072530.1.1	AT4G18700.1	14730064
AT5G47100.1	Solyc04g076810.2.1	AT4G24400.1	14730064
AT5G47100.1	Solyc07g005440.1.1	AT4G30960.1	17898163
AT5G47100.1	Solyc12g010130.1.1	AT4G30960.1	17898163
AT5G47100.1	Solyc08g067310.1.1	AT5G10930.1	14730064
AT5G47100.1	Solyc12g009570.1.1	AT5G35410.1	14730064
AT5G47100.1	Solyc06g007430.1.1	AT5G58380.1	14730064

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068352	Potato	cytosol	88.37	88.37
Solyc08g077770.2.1	Tomato	cytosol	80.93	81.69
Bra012655.1-P	Field mustard	cytosol	75.81	76.53
CDX90465	Canola	cytosol	75.81	76.53
Bra040169.1-P	Field mustard	cytosol	75.35	76.06
GSMUA_AchrUn_...	Banana	cytosol	75.35	76.06
EER94470	Sorghum	cytosol	75.35	76.06
CDY38412	Canola	cytosol	75.35	76.06
AT5G47100.1	Thale cress	cytosol	74.88	75.59
Zm00001d029976_P004	Maize	cytosol, mitochondrion	74.88	75.59
Os10t0564800-01	Rice	plasma membrane	74.88	75.59
CDY09616	Canola	cytosol	74.88	75.59
CDX78784	Canola	cytosol	74.88	75.59
TraesCS1A01G215800.1	Wheat	cytosol	75.35	75.35
TraesCS1B01G229300.1	Wheat	cytosol	75.35	75.35
HORVU1Hr1G055300.1	Barley	cytosol	75.35	75.35
TraesCSU01G178500.1	Wheat	cytosol	75.35	75.35
GSMUA_Achr4P30070_001	Banana	cytosol	74.42	75.12
CDY28977	Canola	cytosol	73.95	74.65
Bra022104.1-P	Field mustard	cytosol	73.95	74.65
Solyc08g007160.2.1	Tomato	cytosol	73.95	73.95
CDY40580	Canola	cytosol	73.02	73.71
Bra017504.1-P	Field mustard	cytosol	73.02	73.71
CDY25987	Canola	cytosol	73.02	73.71
CDY69850	Canola	cytosol	73.02	73.71
GSMUA_Achr4P26350_001	Banana	cytosol	72.56	73.24
KRH28207	Soybean	cytosol	71.63	72.64
KRH57533	Soybean	mitochondrion	70.7	71.36
TraesCSU01G129500.1	Wheat	cytosol, mitochondrion	71.63	71.3
TraesCS5A01G545500.2	Wheat	cytosol	68.84	68.84
HORVU4Hr1G090270.10	Barley	cytosol	69.3	68.66
TraesCS4B01G379200.1	Wheat	cytosol	64.65	68.47
KRH04244	Soybean	cytosol	66.05	64.84
Solyc06g051970.2.1	Tomato	cytosol	62.79	63.08
Solyc03g083320.2.1	Tomato	cytosol	62.79	63.08
AT4G17615.3	Thale cress	cytosol	70.23	59.92
Zm00001d000046_P001	Maize	cytosol	48.37	59.09
Solyc07g065820.2.1	Tomato	cytosol	59.07	57.99
Solyc12g015870.1.1	Tomato	cytosol	59.07	56.7
Solyc12g055920.1.1	Tomato	cytosol, mitochondrion	54.42	51.77
Solyc08g036590.1.1	Tomato	endoplasmic reticulum, extracellular	51.63	48.47
Solyc08g065330.2.1	Tomato	endoplasmic reticulum, extracellular	57.21	47.86
Solyc02g032310.1.1	Tomato	cytosol	48.37	47.49
Solyc08g054570.1.1	Tomato	cytosol	40.0	46.24

Protein Annotations

EnsemblPlants:Solyc06g060980.1.1	EnsemblPlantsGene:Solyc06g060980.1	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR23056	PANTHER:PTHR23056:SF41
PFAM:PF13499	PFAM:PF13833	PFscan:PS50222	PRINTS:PR00450	ScanProsite:PS00018	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI000276656D	UniProt:K4C6S8	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6:+:38956405..38958857

Molecular Weight (calculated)

24559.3 Da

IEP (calculated)

4.411

GRAVY (calculated)

-0.107

Length

215 amino acids

Sequence
(BLAST)

001: MGCFLSKATK KFPRHENPIV LASQTLFSVS EVEALFELFK NISSSVVDDG LISKEEFQLA LFKNKKEENL FSDRIFNLFD VKQKGVIDFG DFVRALDVFH
101: PNAPQEVKID FSFKLYDMDG TGFIERQEVK EMLIALLGES AITLDEEIVE IILDKTFLEA DSNQDGKIDK SEWHEFVGRN PSLLKIMTLP YLRDITTTFP
201: SFVFHSEVDE AATQL

Best Arabidopsis Sequence Match ( AT4G17615.4 )
(BLAST)

001: MGCFHSKAAK EFRGHEDPVK LASETAFSVS EVEALFELFK SISSSVVDDG LINKEEFQLA LFKSRKRENI FANRIFDMFD VKRKGVIDFG DFVRSLNVFH
101: PNASLEDKID FTFRLYDMDC TGYIERQEVK QMLIALLCES EMKLADETIE IILDKTFEDA DVNQDGKIDK LEWSDFVNKN PSLLKIMTLP YLRDITTTFP
201: SFVFHSEVDE IAT

Arabidopsis Description

CBL1calcineurin B-like protein 1 [Source:TAIR;Acc:AT4G17615]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.