Factsheet for Solyc02g081380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050774	Potato	cytosol	99.5	99.5
KRG98019	Soybean	cytosol	88.5	88.5
Solyc02g036450.2.1	Tomato	cytosol, plastid	87.5	87.5
GSMUA_AchrUn_...	Banana	cytosol	57.5	79.86
Solyc02g069370.2.1	Tomato	plastid	79.5	79.5
KRH20053	Soybean	endoplasmic reticulum	88.5	75.97
GSMUA_Achr4P29680_001	Banana	cytosol	78.5	67.09
GSMUA_Achr1P02060_001	Banana	cytosol	78.5	65.69
GSMUA_Achr2P10990_001	Banana	cytosol	79.0	65.56
VIT_04s0079g00760.t01	Wine grape	cytosol	75.0	65.5
Solyc11g008430.1.1	Tomato	cytosol	52.5	52.5
Solyc01g088560.2.1	Tomato	plastid	37.5	36.06
Solyc05g051570.2.1	Tomato	nucleus	37.0	35.75
Solyc03g078570.2.1	Tomato	cytosol	36.5	35.27

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0016787	GO:GO:0030139	UniProt:K4BA08	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF622	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc02g081380.2
EnsemblPlants:Solyc02g081380.2.1	TIGRFAMs:TIGR00231	UniParc:UPI0002767786	:	:	:

Description

No Description!

Coordinates

chr2:-:45368874..45373407

Molecular Weight (calculated)

21818.9 Da

IEP (calculated)

6.532

GRAVY (calculated)

-0.216

Length

200 amino acids

Sequence
(BLAST)

001: MASTGHTNLN AKLVLLGDMG AGKSSLVIRF IKGQFLEFQE STIGAAFFSS TLAVNNATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVY DITSSDSFAK
101: AKKWVQELQK QGNSNMIMAL AGNKADLEDR RNVPAEEARL YAEENGLFFM ETSAKTAANV NDIFYEIAKR LPTAQPTQNP AGMVLENRPA EGSRTASCCT

Best Arabidopsis Sequence Match ( AT5G45130.1 )
(BLAST)

001: MASSGNKNIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DITNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKADLLDA RKVSAEEAEI YAQENSLFFM ETSAKTATNV KDIFYEIAKR LPRVQPAENP TGMVLPNGPG ATAVSSSCCA

Arabidopsis Description

ATRAB5ARAB homolog 1 [Source:TAIR;Acc:AT5G45130]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.