Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0186400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03140.1 | Os02t0186400-01 | AT4G32190.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG37778 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 54.4 | 46.13 |
| Zm00001d013489_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 50.94 | 43.09 |
| TraesCS4A01G275400.1 | Wheat | cytosol | 51.57 | 42.49 |
| TraesCS4B01G038900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 50.94 | 42.41 |
| TraesCS4D01G035800.1 | Wheat | nucleus | 50.31 | 41.67 |
| HORVU4Hr1G006120.1 | Barley | mitochondrion | 38.36 | 32.11 |
| KRH67222 | Soybean | nucleus | 39.94 | 30.75 |
| KRG95545 | Soybean | nucleus | 38.36 | 29.68 |
| VIT_07s0151g01010.t01 | Wine grape | nucleus | 38.36 | 29.61 |
| PGSC0003DMT400049840 | Potato | nucleus | 38.36 | 29.54 |
| Solyc09g065280.2.1 | Tomato | nucleus | 37.74 | 29.06 |
| Os07t0571900-01 | Rice | nucleus | 38.99 | 28.31 |
| Bra032556.1-P | Field mustard | nucleus | 36.79 | 28.19 |
| CDY32499 | Canola | nucleus | 34.59 | 27.16 |
| AT1G03140.1 | Thale cress | nucleus | 35.85 | 27.14 |
| CDY15450 | Canola | nucleus | 36.16 | 27.06 |
| CDY37439 | Canola | nucleus | 33.65 | 26.68 |
| Bra030520.1-P | Field mustard | nucleus | 35.53 | 26.59 |
| Solyc07g052190.1.1 | Tomato | cytosol | 27.36 | 25.82 |
| PGSC0003DMT400027505 | Potato | cytosol | 29.87 | 25.4 |
| PGSC0003DMT400027500 | Potato | nucleus | 27.67 | 25.14 |
| AT1G54590.1 | Thale cress | nucleus | 22.64 | 19.94 |
| Solyc07g052050.1.1 | Tomato | mitochondrion | 13.52 | 19.28 |
| GSMUA_Achr1P22990_001 | Banana | cytosol | 1.57 | 4.31 |
| Bra041171.1-P | Field mustard | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.720.150 | MapMan:35.2 | UniProt:A0A0N7KHW2 | ProteinID:BAS85929.1 | ncoils:Coil | GO:GO:0000350 |
| GO:GO:0000386 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005682 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008380 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0046540 | GO:GO:0071021 |
| GO:GO:0071048 | InterPro:IPR036285 | EnsemblPlantsGene:Os03g0701100 | EnsemblPlants:Os03t0701100-01 | PFAM:PF02840 | PFAM:PF08799 |
| InterPro:PRP4-like | InterPro:PRP4-like_sf | PANTHER:PTHR13007 | PANTHER:PTHR13007:SF20 | InterPro:Prp18 | SMART:SM00500 |
| SUPFAM:SSF158230 | SUPFAM:SSF47938 | UniParc:UPI000393BA51 | SEG:seg | : | : |
Description
Similar to Prp18 domain containing protein, expressed. (Os03t0701100-01);Similar to Prp18 domain containing protein, expressed. (Os03t0701100-02)
Coordinates
chr3:-:28138905..28141758
Molecular Weight (calculated)
35611.5 Da
IEP (calculated)
8.503
GRAVY (calculated)
-0.761
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: PEPIDLPKTN AQKLSIHPPI RHAEPPIRLS KIQSKANPLC ECATATHPHS GEPMDVLKRE LQRKRQLLDA DFGGRKLLRR AEIERREMER IREAERRLLL
101: QKQLRSSSSH HRAASRSTTT PGAPDGDESS RTEHRGDGEE KEGAPLLPRE EVIRRLRVLR QPATLFGEDD AARLRRLHAV LEDPAALADV EAAEIGEGQT
201: NDFLRDIQAL RAKAVAASAS AAAKPKAGAA TAESGGETRE EVPFEELCDE DKIMTFFKRL MSEWSQEMDE MPEAERRTAK GKAAVATCKQ CARYLEPLFK
301: LCKKKVCDSI NSRTHLRI
101: QKQLRSSSSH HRAASRSTTT PGAPDGDESS RTEHRGDGEE KEGAPLLPRE EVIRRLRVLR QPATLFGEDD AARLRRLHAV LEDPAALADV EAAEIGEGQT
201: NDFLRDIQAL RAKAVAASAS AAAKPKAGAA TAESGGETRE EVPFEELCDE DKIMTFFKRL MSEWSQEMDE MPEAERRTAK GKAAVATCKQ CARYLEPLFK
301: LCKKKVCDSI NSRTHLRI
001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
Arabidopsis Description
F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.