Factsheet for Solyc09g065280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g078380.1.1
Solyc08g022030.2.1
Solyc11g005270.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	Solyc08g022030.2.1	AT4G32190.1	21798944
AT1G03140.1	Solyc03g078380.1.1	AT5G13810.1	21798944
AT1G03140.1	Solyc11g005270.1.1	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049840	Potato	nucleus	97.34	97.34
Bra041171.1-P	Field mustard	nucleus	14.53	81.08
GSMUA_Achr1P22990_001	Banana	cytosol	22.28	79.31
VIT_07s0151g01010.t01	Wine grape	nucleus	75.79	75.97
KRG95545	Soybean	nucleus	74.09	74.45
KRH67222	Soybean	nucleus	73.85	73.85
GSMUA_Achr10P...	Banana	nucleus	67.07	73.09
Zm00001d025884_P001	Maize	nucleus	37.29	69.06
AT1G03140.1	Thale cress	nucleus	69.98	68.81
CDY37439	Canola	nucleus	65.62	67.58
Bra032556.1-P	Field mustard	nucleus	67.55	67.23
CDY32499	Canola	nucleus	65.86	67.16
CDY15450	Canola	nucleus	69.01	67.06
Zm00001d025878_P001	Maize	nucleus	62.47	66.67
Bra030520.1-P	Field mustard	nucleus	68.52	66.59
Os07t0571900-01	Rice	nucleus	64.89	61.19
EER99582	Sorghum	nucleus	64.65	60.96
Zm00001d021867_P001	Maize	nucleus	64.65	60.82
Zm00001d021864_P001	Maize	nucleus	64.65	60.68
TraesCS2B01G224600.1	Wheat	nucleus	61.5	58.93
TraesCS2A01G197100.1	Wheat	nucleus	61.26	58.7
Solyc07g052190.1.1	Tomato	cytosol	47.46	58.16
KXG37778	Sorghum	cytosol, mitochondrion, nucleus, plastid	52.3	57.6
TraesCS4B01G038900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	53.27	57.59
Solyc07g052050.1.1	Tomato	mitochondrion	30.99	57.4
TraesCS2D01G205000.1	Wheat	nucleus	61.26	56.35
HORVU2Hr1G038180.2	Barley	mitochondrion	59.56	55.91
TraesCS4D01G035800.1	Wheat	nucleus	51.57	55.47
Zm00001d013489_P001	Maize	cytosol, mitochondrion, nucleus, plastid	50.36	55.32
TraesCS4A01G275400.1	Wheat	cytosol	50.85	54.4
Zm00001d025877_P001	Maize	nucleus	37.05	53.87
AT1G54590.1	Thale cress	nucleus	46.0	52.63
GSMUA_Achr1P22980_001	Banana	nucleus	31.72	51.78
Os03t0701100-01	Rice	cytosol, nucleus, plastid	29.06	37.74
HORVU4Hr1G006120.1	Barley	mitochondrion	20.34	22.11

Protein Annotations

Gene3D:1.10.720.150	Gene3D:1.20.940.10	MapMan:35.2	ncoils:Coil	GO:GO:0000350	GO:GO:0000386
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0005682	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	GO:GO:0071021	GO:GO:0071048
InterPro:IPR036285	UniProt:K4CUF5	PFAM:PF02840	PFAM:PF08799	InterPro:PRP4-like	InterPro:PRP4-like_sf
PANTHER:PTHR13007	PANTHER:PTHR13007:SF23	InterPro:Prp18	SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF47938
EnsemblPlantsGene:Solyc09g065280.2	EnsemblPlants:Solyc09g065280.2.1	UniParc:UPI000276C51E	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:63346770..63350591

Molecular Weight (calculated)

47292.3 Da

IEP (calculated)

8.041

GRAVY (calculated)

-0.824

Length

413 amino acids

Sequence
(BLAST)

001: MDILKQELEQ RRKNLAQDVG GRKVFKRSEI EQKRLQRIHE EEKREAEAKA LRQKQFEQNQ KSTDDSSSKS NSTTDTQCLK QDASSLSVSK ALTDEQKIDG
101: LNLPRQEVVR RLRFLKQPVT LFGEDDEARL DRLKFVLKAG TFEVDDSDMT EGQTNDFLRD IVELKKRQKS GMMSERKRKV TEDSGEDKDG GGGDEDLSGD
201: GNSSGVDHDK DLKRMKTNFV ELCDEDKILV FFKKLLNEWN QELDEMTDSE KRTAKGKSMV ATFKQCARYL HPLFKFCRKK LLPDDIRQAL LVVVECCMKR
301: DYLAAMDQYI KMAIGNAPWP IGVTMVGIHE RSAREKIYTN SVAHIMNDET TRKYLQSVKR LMTFCQRRYP AMPSKAVEFN SLANGSDLQS LLAEEGTSGG
401: SQTSEERLRI MPA

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.