Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra041171.1-P | Field mustard | nucleus | 15.51 | 75.68 |
| GSMUA_Achr1P22990_001 | Banana | cytosol | 23.27 | 72.41 |
| Zm00001d025884_P001 | Maize | nucleus | 33.52 | 54.26 |
| AT1G03140.1 | Thale cress | nucleus | 60.39 | 51.9 |
| Bra032556.1-P | Field mustard | nucleus | 58.17 | 50.6 |
| CDY37439 | Canola | nucleus | 55.96 | 50.37 |
| CDY15450 | Canola | nucleus | 58.73 | 49.88 |
| CDY32499 | Canola | nucleus | 55.68 | 49.63 |
| Bra030520.1-P | Field mustard | nucleus | 58.17 | 49.41 |
| GSMUA_Achr10P... | Banana | nucleus | 51.52 | 49.08 |
| Solyc07g052050.1.1 | Tomato | mitochondrion | 30.19 | 48.88 |
| KRG95545 | Soybean | nucleus | 54.85 | 48.18 |
| KRH67222 | Soybean | nucleus | 54.02 | 47.22 |
| PGSC0003DMT400027500 | Potato | nucleus | 45.15 | 46.57 |
| VIT_07s0151g01010.t01 | Wine grape | nucleus | 52.91 | 46.36 |
| PGSC0003DMT400049840 | Potato | nucleus | 52.91 | 46.25 |
| Solyc09g065280.2.1 | Tomato | nucleus | 52.63 | 46.0 |
| Zm00001d025878_P001 | Maize | nucleus | 49.03 | 45.74 |
| PGSC0003DMT400027505 | Potato | cytosol | 45.98 | 44.38 |
| Solyc07g052190.1.1 | Tomato | cytosol | 39.34 | 42.14 |
| Os07t0571900-01 | Rice | nucleus | 50.42 | 41.55 |
| EER99582 | Sorghum | nucleus | 49.86 | 41.1 |
| Zm00001d021864_P001 | Maize | nucleus | 49.86 | 40.91 |
| TraesCS2A01G197100.1 | Wheat | nucleus | 48.75 | 40.84 |
| TraesCS2B01G224600.1 | Wheat | nucleus | 48.75 | 40.84 |
| Zm00001d021867_P001 | Maize | nucleus | 49.58 | 40.77 |
| TraesCS4A01G275400.1 | Wheat | cytosol | 42.94 | 40.16 |
| TraesCS4D01G035800.1 | Wheat | nucleus | 42.66 | 40.1 |
| HORVU2Hr1G038180.2 | Barley | mitochondrion | 48.2 | 39.55 |
| TraesCS4B01G038900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 41.83 | 39.53 |
| KXG37778 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 41.0 | 39.47 |
| Zm00001d013489_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 40.72 | 39.1 |
| TraesCS2D01G205000.1 | Wheat | nucleus | 48.48 | 38.98 |
| GSMUA_Achr1P22980_001 | Banana | nucleus | 21.61 | 30.83 |
| Zm00001d025877_P001 | Maize | nucleus | 23.82 | 30.28 |
| Os03t0701100-01 | Rice | cytosol, nucleus, plastid | 19.94 | 22.64 |
| HORVU4Hr1G006120.1 | Barley | mitochondrion | 11.63 | 11.05 |
Protein Annotations
| Gene3D:1.20.940.10 | MapMan:35.2 | EntrezGene:841901 | UniProt:A0A178W7T4 | ProteinID:AEE33122.1 | ArrayExpress:AT1G54590 |
| EnsemblPlantsGene:AT1G54590 | RefSeq:AT1G54590 | TAIR:AT1G54590 | RefSeq:AT1G54590-TAIR-G | EnsemblPlants:AT1G54590.1 | TAIR:AT1G54590.1 |
| Unigene:At.52201 | UniProt:F4HWZ0 | GO:GO:0000350 | GO:GO:0000386 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005682 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0046540 | GO:GO:0071021 | GO:GO:0071048 | RefSeq:NP_175861.2 | ProteinID:OAP14509.1 |
| PFAM:PF02840 | PANTHER:PTHR13007 | PANTHER:PTHR13007:SF23 | InterPro:Prp18 | SUPFAM:SSF47938 | UniParc:UPI0001E92AA9 |
| SEG:seg | : | : | : | : | : |
Description
Pre-mRNA-splicing factor-like protein [Source:UniProtKB/TrEMBL;Acc:F4HWZ0]
Coordinates
chr1:-:20391560..20393503
Molecular Weight (calculated)
42003.2 Da
IEP (calculated)
8.890
GRAVY (calculated)
-0.658
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVSKSTNSR DDNKHLGADE NPNEFINSKC FKLASHFKTR DFRFGQLSRK DGNNFKSQRV THRRDTQPNR GRGSNLTYSW MSFIVRLDRL KYVLKEGLFE
101: EVDNDMTQGE TNDFLRDITE LKKRERSSGL MNDRKRKTSN DDELIGAEKE DLKLLEEANF EDLCDEDKIL VFCKKLLLEW KQELEAMENT ERRTAIGKQM
201: LATFNQCARY LTPLFHLCRN KCLPADIRQG LMVMVNCWIK RDYLDATAQF IKLAIGNAPW PIGVTMVGIH ERSAREKIST SSSVAHIMNN ETTRKYLQSV
301: KRLMTFCQRR YSALPSKSIE FNSLANGSNL HSLLAEERFF AADRERVSEE RLWLMPSLNE I
101: EVDNDMTQGE TNDFLRDITE LKKRERSSGL MNDRKRKTSN DDELIGAEKE DLKLLEEANF EDLCDEDKIL VFCKKLLLEW KQELEAMENT ERRTAIGKQM
201: LATFNQCARY LTPLFHLCRN KCLPADIRQG LMVMVNCWIK RDYLDATAQF IKLAIGNAPW PIGVTMVGIH ERSAREKIST SSSVAHIMNN ETTRKYLQSV
301: KRLMTFCQRR YSALPSKSIE FNSLANGSNL HSLLAEERFF AADRERVSEE RLWLMPSLNE I
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.