Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03140.1 | GSMUA_AchrUn_... | AT4G32190.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P22990_001 | Banana | cytosol | 24.54 | 80.17 |
| Bra041171.1-P | Field mustard | nucleus | 14.78 | 75.68 |
| VIT_07s0151g01010.t01 | Wine grape | nucleus | 77.04 | 70.87 |
| KRH67222 | Soybean | nucleus | 75.46 | 69.25 |
| KRG95545 | Soybean | nucleus | 74.41 | 68.61 |
| PGSC0003DMT400049840 | Potato | nucleus | 73.35 | 67.31 |
| Solyc09g065280.2.1 | Tomato | nucleus | 73.09 | 67.07 |
| Zm00001d025884_P001 | Maize | nucleus | 39.31 | 66.82 |
| Zm00001d025878_P001 | Maize | nucleus | 66.49 | 65.12 |
| AT1G03140.1 | Thale cress | nucleus | 68.6 | 61.9 |
| CDY37439 | Canola | nucleus | 65.17 | 61.6 |
| Bra032556.1-P | Field mustard | nucleus | 66.75 | 60.96 |
| CDY32499 | Canola | nucleus | 64.91 | 60.74 |
| Os07t0571900-01 | Rice | nucleus | 69.66 | 60.27 |
| EER99582 | Sorghum | nucleus | 69.39 | 60.05 |
| Zm00001d021864_P001 | Maize | nucleus | 69.66 | 60.0 |
| Zm00001d021867_P001 | Maize | nucleus | 69.13 | 59.68 |
| CDY15450 | Canola | nucleus | 66.75 | 59.53 |
| Bra030520.1-P | Field mustard | nucleus | 66.49 | 59.29 |
| TraesCS2B01G224600.1 | Wheat | nucleus | 66.49 | 58.47 |
| TraesCS2A01G197100.1 | Wheat | nucleus | 66.23 | 58.24 |
| PGSC0003DMT400027500 | Potato | nucleus | 53.03 | 57.43 |
| GSMUA_Achr1P22980_001 | Banana | nucleus | 38.26 | 57.31 |
| Solyc07g052050.1.1 | Tomato | mitochondrion | 33.25 | 56.5 |
| PGSC0003DMT400027505 | Potato | cytosol | 55.15 | 55.88 |
| HORVU2Hr1G038180.2 | Barley | mitochondrion | 64.64 | 55.68 |
| TraesCS2D01G205000.1 | Wheat | nucleus | 65.96 | 55.68 |
| Solyc07g052190.1.1 | Tomato | cytosol | 46.7 | 52.52 |
| AT1G54590.1 | Thale cress | nucleus | 49.08 | 51.52 |
| Zm00001d025877_P001 | Maize | nucleus | 38.52 | 51.41 |
Protein Annotations
| Gene3D:1.10.720.150 | Gene3D:1.20.940.10 | MapMan:35.2 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008380 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr10G29930_001 | EnsemblPlants:GSMUA_Achr10P29930_001 | EnsemblPlants:GSMUA_Achr10T29930_001 | InterPro:IPR036285 |
| UniProt:M0RML7 | PFAM:PF02840 | PFAM:PF08799 | InterPro:PRP4-like | InterPro:PRP4-like_sf | PANTHER:PTHR13007 |
| PANTHER:PTHR13007:SF23 | InterPro:Prp18 | SMART:SM00500 | SUPFAM:SSF158230 | SUPFAM:SSF47938 | UniParc:UPI000294D334 |
| SEG:seg | : | : | : | : | : |
Description
Putative Pre-mRNA-splicing factor 18 [Source:GMGC_GENE;Acc:GSMUA_Achr10G29930_001]
Coordinates
chr10:-:32232740..32238238
Molecular Weight (calculated)
42636.1 Da
IEP (calculated)
9.787
GRAVY (calculated)
-0.620
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLKRELQK KRQSLQSDFG GRKLLKRSEI DQKTIQKLRD EEQRDLLSKS LRSTSASSSS SSPAASSSTA NASSSSLDAN PGNSLPPALA SAAAEVIRRL
101: RILKQPITFF GEDDDARLDR LKLTLKSGIL EIDSDMTEGQ TNDFLRDIYE LRKRQKSGST SSGDGGSSGV DTDKDLKRMK AKFEDLCDED KILVFFKRLL
201: NEWNQELNEM AEAEKRTAKG KSMVATFKQC ARYLSPLFKF CRKKVLPDDI RQALLVVVEC CMKRDYLAAM DQYIKMAIGN APWPIGVTMV GIHERSAREK
301: IYTNSVAHIM NDETTRKYLQ SVKRLMTFCQ RRNPAVPSKS VEFNSLANGS DLQSLLAEER YPGKGASEER LRLLPTPKE
101: RILKQPITFF GEDDDARLDR LKLTLKSGIL EIDSDMTEGQ TNDFLRDIYE LRKRQKSGST SSGDGGSSGV DTDKDLKRMK AKFEDLCDED KILVFFKRLL
201: NEWNQELNEM AEAEKRTAKG KSMVATFKQC ARYLSPLFKF CRKKVLPDDI RQALLVVVEC CMKRDYLAAM DQYIKMAIGN APWPIGVTMV GIHERSAREK
301: IYTNSVAHIM NDETTRKYLQ SVKRLMTFCQ RRNPAVPSKS VEFNSLANGS DLQSLLAEER YPGKGASEER LRLLPTPKE
001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
Arabidopsis Description
F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.