Factsheet for GSMUA_Achr1P22990_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	GSMUA_AchrUn_...	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041171.1-P	Field mustard	nucleus	44.83	70.27
Solyc07g052050.1.1	Tomato	mitochondrion	54.31	28.25
GSMUA_Achr10P...	Banana	nucleus	80.17	24.54
Zm00001d013489_P001	Maize	cytosol, mitochondrion, nucleus, plastid	77.59	23.94
KXG37778	Sorghum	cytosol, mitochondrion, nucleus, plastid	76.72	23.73
CDY37439	Canola	nucleus	81.9	23.69
CDY32499	Canola	nucleus	81.9	23.46
TraesCS4A01G275400.1	Wheat	cytosol	77.59	23.32
TraesCS4B01G038900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	76.72	23.3
AT1G54590.1	Thale cress	nucleus	72.41	23.27
TraesCS4D01G035800.1	Wheat	nucleus	75.86	22.92
Bra032556.1-P	Field mustard	nucleus	81.9	22.89
KRG95545	Soybean	nucleus	81.03	22.87
PGSC0003DMT400027500	Potato	nucleus	68.97	22.86
AT1G03140.1	Thale cress	nucleus	81.9	22.62
VIT_07s0151g01010.t01	Wine grape	nucleus	80.17	22.57
KRH67222	Soybean	nucleus	80.17	22.52
Bra030520.1-P	Field mustard	nucleus	81.9	22.35
CDY15450	Canola	nucleus	81.9	22.35
PGSC0003DMT400049840	Potato	nucleus	79.31	22.28
Solyc09g065280.2.1	Tomato	nucleus	79.31	22.28
PGSC0003DMT400027505	Potato	cytosol	64.66	20.05
Solyc07g052190.1.1	Tomato	cytosol	52.59	18.1
GSMUA_Achr1P22980_001	Banana	nucleus	3.45	1.58
HORVU4Hr1G006120.1	Barley	mitochondrion	5.17	1.58
Os03t0701100-01	Rice	cytosol, nucleus, plastid	4.31	1.57

Protein Annotations

EnsemblPlants:GSMUA_Achr1P22990_001	EnsemblPlants:GSMUA_Achr1T22990_001	EnsemblPlantsGene:GSMUA_Achr1G22990_001	Gene3D:1.20.940.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009987	InterPro:Prp18	PANTHER:PTHR13007	PANTHER:PTHR13007:SF23	PFAM:PF02840
SUPFAM:SSF47938	UniParc:UPI000295F534	UniProt:M0S2A7	MapMan:35.2	:	:

Description

pre-mRNA-splicing factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G22990_001]

Coordinates

chr1:+:17277376..17277726

Molecular Weight (calculated)

13142.8 Da

IEP (calculated)

8.495

GRAVY (calculated)

-0.316

Length

116 amino acids

Sequence
(BLAST)

001: MKRDCLAAMD EYIRLAIGNA PWPIGVTMVG IHERSAHEKI CTNSVAHIMN DETTRKYLQS VKRLMSFCQR RYPTDPSKSI EFNSLANGSD LQSLLAEERA
101: VNNVLSQERF RLVSAV

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.