Factsheet for TraesCS4A01G275400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G180500.1
TraesCS6D01G164600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	TraesCS6A01G180500.1	AT4G32190.1	21798944
AT1G03140.1	TraesCS6D01G164600.1	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G035800.1	Wheat	nucleus	88.6	89.06
TraesCS4B01G038900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	84.46	85.34
GSMUA_Achr1P22990_001	Banana	cytosol	23.32	77.59
KXG37778	Sorghum	cytosol, mitochondrion, nucleus, plastid	69.17	71.2
Zm00001d013489_P001	Maize	cytosol, mitochondrion, nucleus, plastid	67.36	69.15
Bra041171.1-P	Field mustard	nucleus	12.95	67.57
KRH67222	Soybean	nucleus	58.29	54.48
KRG95545	Soybean	nucleus	56.74	53.28
Os03t0701100-01	Rice	cytosol, nucleus, plastid	42.49	51.57
VIT_07s0151g01010.t01	Wine grape	nucleus	54.92	51.46
PGSC0003DMT400049840	Potato	nucleus	54.92	51.33
Solyc09g065280.2.1	Tomato	nucleus	54.4	50.85
Bra032556.1-P	Field mustard	nucleus	54.15	50.36
PGSC0003DMT400027500	Potato	nucleus	45.6	50.29
AT1G03140.1	Thale cress	nucleus	54.4	50.0
CDY37439	Canola	nucleus	51.81	49.88
CDY15450	Canola	nucleus	54.66	49.65
CDY32499	Canola	nucleus	52.07	49.63
Solyc07g052050.1.1	Tomato	mitochondrion	28.5	49.33
Bra030520.1-P	Field mustard	nucleus	53.89	48.94
TraesCS2A01G197100.1	Wheat	nucleus	52.85	47.33
PGSC0003DMT400027505	Potato	cytosol	44.82	46.26
Solyc07g052190.1.1	Tomato	cytosol	39.64	45.4
AT1G54590.1	Thale cress	nucleus	40.16	42.94
HORVU4Hr1G006120.1	Barley	mitochondrion	35.49	36.05

Protein Annotations

Gene3D:1.10.720.150	Gene3D:1.20.940.10	MapMan:35.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	InterPro:IPR036285	PFAM:PF02840	PFAM:PF08799	InterPro:PRP4-like	InterPro:PRP4-like_sf
PANTHER:PTHR13007	PANTHER:PTHR13007:SF23	InterPro:Prp18	SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF47938
EnsemblPlantsGene:TraesCS4A01G275400	EnsemblPlants:TraesCS4A01G275400.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:+:584537677..584539036

Molecular Weight (calculated)

43096.2 Da

IEP (calculated)

8.565

GRAVY (calculated)

-0.609

Length

386 amino acids

Sequence
(BLAST)

001: MDVLKRELQL KRRQLDADFG GRKVLRRAEI EALEIQRLRV AERERLIQKK KEEEELRSRP APASSSSSSM PALPPAAVAN VAKACNDRAE GSRESSSLPR
101: EEVIRRLRLL RQPATLFGED DAARLRRLHD ALEDPAAVAG VDAAEIGEGQ TNDFLRDFQA PRARAAAVAS KPKAGAADRS DGDGEKEKEE APFDELCDED
201: KIVAFFKRLL SEWGQELDET PDAERRTARG KAAVATCKQC ARYLEPLFRL CRKKALPGDV RRALLDVVRC CARRDYLAAT DSYIRLAIGN SPWPIGVTMV
301: GIHERSAREK IHANGVAHVM NDETTRKYLQ SVKRLMTFCQ RRYPTDPSRS VEFNSLANGS DLHSLLLAEK SAENQPEETL RLVAAS

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.