Factsheet for PGSC0003DMT400027500

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010993
PGSC0003DMT400015465
PGSC0003DMT400047487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	PGSC0003DMT400010993	AT4G32190.1	21798944
AT1G03140.1	PGSC0003DMT400015465	AT5G13810.1	21798944
AT1G03140.1	PGSC0003DMT400047487	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g052190.1.1	Tomato	cytosol	71.71	74.48
PGSC0003DMT400027505	Potato	cytosol	74.29	69.52
Solyc07g052050.1.1	Tomato	mitochondrion	44.29	69.51
GSMUA_Achr1P22990_001	Banana	cytosol	22.86	68.97
Bra041171.1-P	Field mustard	nucleus	14.57	68.92
Zm00001d025884_P001	Maize	nucleus	36.57	57.4
PGSC0003DMT400049840	Potato	nucleus	64.86	54.96
VIT_07s0151g01010.t01	Wine grape	nucleus	62.86	53.4
KRG95545	Soybean	nucleus	62.29	53.04
GSMUA_Achr10P...	Banana	nucleus	57.43	53.03
KRH67222	Soybean	nucleus	62.57	53.03
Zm00001d025878_P001	Maize	nucleus	56.86	51.42
AT1G03140.1	Thale cress	nucleus	60.86	50.71
CDY37439	Canola	nucleus	58.0	50.62
CDY15450	Canola	nucleus	61.43	50.59
Bra032556.1-P	Field mustard	nucleus	59.71	50.36
Bra030520.1-P	Field mustard	nucleus	60.86	50.12
CDY32499	Canola	nucleus	57.71	49.88
Zm00001d021867_P001	Maize	nucleus	58.86	46.92
Zm00001d021864_P001	Maize	nucleus	58.86	46.82
EER99582	Sorghum	nucleus	58.57	46.8
Os07t0571900-01	Rice	nucleus	58.0	46.35
TraesCS2A01G197100.1	Wheat	nucleus	56.57	45.94
TraesCS2B01G224600.1	Wheat	nucleus	56.57	45.94
TraesCS4B01G038900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.0	45.81
TraesCS4A01G275400.1	Wheat	cytosol	50.29	45.6
TraesCS4D01G035800.1	Wheat	nucleus	49.71	45.31
AT1G54590.1	Thale cress	nucleus	46.57	45.15
Zm00001d013489_P001	Maize	cytosol, mitochondrion, nucleus, plastid	48.29	44.95
KXG37778	Sorghum	cytosol, mitochondrion, nucleus, plastid	48.0	44.8
TraesCS2D01G205000.1	Wheat	nucleus	56.86	44.32
HORVU2Hr1G038180.2	Barley	mitochondrion	55.71	44.32
GSMUA_Achr1P22980_001	Banana	nucleus	28.86	39.92
Zm00001d025877_P001	Maize	nucleus	31.71	39.08
Os03t0701100-01	Rice	cytosol, nucleus, plastid	25.14	27.67
HORVU4Hr1G006120.1	Barley	mitochondrion	17.14	15.79

Protein Annotations

Gene3D:1.10.720.150	Gene3D:1.20.940.10	EntrezGene:102596855	MapMan:35.2	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	InterPro:IPR036285	UniProt:M1APR0	PFAM:PF02840
PFAM:PF08799	EnsemblPlantsGene:PGSC0003DMG400010600	PGSC:PGSC0003DMG400010600	EnsemblPlants:PGSC0003DMT400027500	InterPro:PRP4-like	InterPro:PRP4-like_sf
PANTHER:PTHR13007	PANTHER:PTHR13007:SF23	InterPro:Prp18	SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF47938
UniParc:UPI0002963AFD	RefSeq:XP_006363760.1	SEG:seg	:	:	:

Description

Splicing factor Prp18 family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010600]

Coordinates

chr7:+:46530423..46531475

Molecular Weight (calculated)

40602.9 Da

IEP (calculated)

8.644

GRAVY (calculated)

-0.597

Length

350 amino acids

Sequence
(BLAST)

001: MEEVKQITEK LRNNRAQYVG RRKFFNKLEI EQSKKREEAK SQQHNNHKSY LSTDNIKSES SSLVSLPLQQ VVRRLRVLKH PVTLFGEDEE ARFARLNLVL
101: KAGLFEVEDS DMTEGQTNDF LRDVLELKKS RMLKRKATDQ DKDGEDLKRM KTNFEDLCDE DKILVFYKKL LNEWNQELDE MSSEAKNQTV VATFMQCARD
201: LNPLFDLCRK KLLNIDIRKA LVVMVECCMN REYSAAMDQY LNKIAIGNAP WPIGVTMVGI HERSAREKIH TNSVAHVMND ETTRKLLYSV KRLLTFCQRR
301: YPTMPSKCVE FNSLANGSDL HFLRAQESTS QTSEERLPII LMPAQGTSLV

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.