Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU6Hr1G036020.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03140.1 | HORVU6Hr1G036020.1 | AT4G32190.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G197100.1 | Wheat | nucleus | 89.77 | 91.65 |
| TraesCS2B01G224600.1 | Wheat | nucleus | 89.32 | 91.18 |
| TraesCS2D01G205000.1 | Wheat | nucleus | 89.77 | 87.97 |
| Zm00001d025884_P001 | Maize | nucleus | 40.68 | 80.27 |
| Os07t0571900-01 | Rice | nucleus | 77.73 | 78.08 |
| EER99582 | Sorghum | nucleus | 75.45 | 75.8 |
| Zm00001d021867_P001 | Maize | nucleus | 75.23 | 75.4 |
| Zm00001d025878_P001 | Maize | nucleus | 65.45 | 74.42 |
| Zm00001d021864_P001 | Maize | nucleus | 74.32 | 74.32 |
| Bra041171.1-P | Field mustard | nucleus | 11.82 | 70.27 |
| GSMUA_Achr10P... | Banana | nucleus | 55.68 | 64.64 |
| Zm00001d025877_P001 | Maize | nucleus | 40.68 | 63.03 |
| KRH67222 | Soybean | nucleus | 56.59 | 60.29 |
| Solyc09g065280.2.1 | Tomato | nucleus | 55.91 | 59.56 |
| PGSC0003DMT400049840 | Potato | nucleus | 55.91 | 59.56 |
| KRG95545 | Soybean | nucleus | 55.45 | 59.37 |
| VIT_07s0151g01010.t01 | Wine grape | nucleus | 55.45 | 59.22 |
| PGSC0003DMT400027500 | Potato | nucleus | 44.32 | 55.71 |
| AT1G03140.1 | Thale cress | nucleus | 52.73 | 55.24 |
| CDY37439 | Canola | nucleus | 50.23 | 55.11 |
| Bra032556.1-P | Field mustard | nucleus | 51.82 | 54.94 |
| CDY32499 | Canola | nucleus | 50.23 | 54.57 |
| Solyc07g052050.1.1 | Tomato | mitochondrion | 27.5 | 54.26 |
| CDY15450 | Canola | nucleus | 52.27 | 54.12 |
| Bra030520.1-P | Field mustard | nucleus | 51.82 | 53.65 |
| PGSC0003DMT400027505 | Potato | cytosol | 44.09 | 51.87 |
| Solyc07g052190.1.1 | Tomato | cytosol | 38.64 | 50.45 |
| AT1G54590.1 | Thale cress | nucleus | 39.55 | 48.2 |
| GSMUA_Achr1P22980_001 | Banana | nucleus | 25.23 | 43.87 |
| HORVU4Hr1G006120.1 | Barley | mitochondrion | 16.82 | 19.47 |
Protein Annotations
| Gene3D:1.10.720.150 | Gene3D:1.20.940.10 | MapMan:35.2 | UniProt:A0A287HR12 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | EnsemblPlantsGene:HORVU2Hr1G038180 | EnsemblPlants:HORVU2Hr1G038180.2 | InterPro:IPR036285 |
| PFAM:PF02840 | PFAM:PF08799 | InterPro:PRP4-like | InterPro:PRP4-like_sf | PANTHER:PTHR13007 | PANTHER:PTHR13007:SF23 |
| InterPro:Prp18 | SMART:SM00500 | SUPFAM:SSF158230 | SUPFAM:SSF47938 | UniParc:UPI000B4740E3 | SEG:seg |
Description
No Description!
Coordinates
chrchr2H:-:178456779..178460038
Molecular Weight (calculated)
49240.8 Da
IEP (calculated)
8.454
GRAVY (calculated)
-0.710
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: ARKPHRRRLP TSASISVSGK RRGALRCIAV EMDLLRRELE EKQLQKRRQI PAKVTSVPAP NSSAASDPTN SNADPAQAGD GNPNPSSSAA AASVPPALAG
101: KKATPEDTLH SEERRIDELV LPRNEVMRRL RVLREPVTLF GEDDADRLDR LKLVLKSGAI DDIDDLEMTE GQTNDFLRDM IELRMRQKAG RDAYGKGKGK
201: RVGAGDGGEG GALGDDVDEG DGDARRSGDD ADADKDSKRM KTKFEELCDE DKILVFFKRL LNEWNQELDD MTELEKRTAK GKSMFATFKQ CARYLSPLFE
301: FCRKKVLPDD IRKALLFIVD CCMKRDYLQA MDQYIKLAIG NAPWPIGVTM VGIHERSARE KIYTNSVAHI MNDETTRKYL QSIKRLMTLC QRRYPALPSK
401: SVEFNSLANG SDLQALLSEE KDPTKGPSEE RLRLMPASKE
101: KKATPEDTLH SEERRIDELV LPRNEVMRRL RVLREPVTLF GEDDADRLDR LKLVLKSGAI DDIDDLEMTE GQTNDFLRDM IELRMRQKAG RDAYGKGKGK
201: RVGAGDGGEG GALGDDVDEG DGDARRSGDD ADADKDSKRM KTKFEELCDE DKILVFFKRL LNEWNQELDD MTELEKRTAK GKSMFATFKQ CARYLSPLFE
301: FCRKKVLPDD IRKALLFIVD CCMKRDYLQA MDQYIKLAIG NAPWPIGVTM VGIHERSARE KIYTNSVAHI MNDETTRKYL QSIKRLMTLC QRRYPALPSK
401: SVEFNSLANG SDLQALLSEE KDPTKGPSEE RLRLMPASKE
001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
Arabidopsis Description
F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.