CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68825
CDX70521
CDX75227
CDX78539
CDX81487
CDX81488
CDX81489
CDY61790
CDY61791
CDY67732
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	CDX68825	AT4G32190.1	21798944
AT1G03140.1	CDX75227	AT4G32190.1	21798944
AT1G03140.1	CDX81487	AT4G32190.1	21798944
AT1G03140.1	CDX81488	AT4G32190.1	21798944
AT1G03140.1	CDX81489	AT4G32190.1	21798944
AT1G03140.1	CDY61790	AT4G32190.1	21798944
AT1G03140.1	CDY61791	AT4G32190.1	21798944
AT1G03140.1	CDX70521	AT5G13810.1	21798944
AT1G03140.1	CDX78539	AT5G13810.1	21798944
AT1G03140.1	CDY67732	AT5G13810.1	21798944
AT1G03140.1	CDY70634	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32499	Canola	nucleus	97.01	96.05
CDY15450	Canola	nucleus	91.52	86.35
GSMUA_Achr1P22990_001	Banana	cytosol	23.69	81.9
AT1G03140.1	Thale cress	nucleus	84.04	80.24
VIT_07s0151g01010.t01	Wine grape	nucleus	70.57	68.69
KRG95545	Soybean	nucleus	69.58	67.88
KRH67222	Soybean	nucleus	69.58	67.55
Solyc09g065280.2.1	Tomato	nucleus	67.58	65.62
PGSC0003DMT400049840	Potato	nucleus	67.33	65.38
GSMUA_Achr10P...	Banana	nucleus	61.6	65.17
Zm00001d025884_P001	Maize	nucleus	33.17	59.64
Zm00001d025878_P001	Maize	nucleus	57.11	59.17
PGSC0003DMT400027500	Potato	nucleus	50.62	58.0
AT1G54590.1	Thale cress	nucleus	50.37	55.96
PGSC0003DMT400027505	Potato	cytosol	52.12	55.88
Os07t0571900-01	Rice	nucleus	60.85	55.71
EER99582	Sorghum	nucleus	60.6	55.48
Zm00001d021867_P001	Maize	nucleus	60.6	55.35
Zm00001d021864_P001	Maize	nucleus	60.6	55.23
KXG37778	Sorghum	cytosol, mitochondrion, nucleus, plastid	50.87	54.4
Zm00001d013489_P001	Maize	cytosol, mitochondrion, nucleus, plastid	50.12	53.46
TraesCS2B01G224600.1	Wheat	nucleus	57.11	53.13
Solyc07g052050.1.1	Tomato	mitochondrion	29.43	52.91
TraesCS2A01G197100.1	Wheat	nucleus	56.61	52.67
Solyc07g052190.1.1	Tomato	cytosol	44.14	52.52
TraesCS4A01G275400.1	Wheat	cytosol	49.88	51.81
TraesCS4B01G038900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	49.13	51.57
TraesCS4D01G035800.1	Wheat	nucleus	49.38	51.56
TraesCS2D01G205000.1	Wheat	nucleus	56.86	50.78
HORVU2Hr1G038180.2	Barley	mitochondrion	55.11	50.23
GSMUA_Achr1P22980_001	Banana	nucleus	29.93	47.43
Zm00001d025877_P001	Maize	nucleus	33.42	47.18
Os03t0701100-01	Rice	cytosol, nucleus, plastid	26.68	33.65
HORVU4Hr1G006120.1	Barley	mitochondrion	19.45	20.53

Protein Annotations

Gene3D:1.10.720.150	Gene3D:1.20.940.10	MapMan:35.2	GO:A0A078HJB7	UniProt:A0A078HJB7	EnsemblPlants:CDY37439
ProteinID:CDY37439	ProteinID:CDY37439.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00064017001	InterPro:IPR036285	PFAM:PF02840	PFAM:PF08799	InterPro:PRP4-like
InterPro:PRP4-like_sf	PANTHER:PTHR13007	PANTHER:PTHR13007:SF23	InterPro:Prp18	SMART:SM00500	SUPFAM:SSF158230
SUPFAM:SSF47938	UniParc:UPI0004EE0EC0	SEG:seg	:	:	:

Description

BnaC08g45770DBnaC08g45770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJB7]

Coordinates

chrLK032400:+:93248..94900

Molecular Weight (calculated)

45948.7 Da

IEP (calculated)

9.358

GRAVY (calculated)

-0.870

Length

401 amino acids

Sequence
(BLAST)

001: MDLLRQEILK KRQSLSEEAG GKKFYKRSDI EQKKLQKLRE EERREHELKA QRRFAAAASI SGGKSSGDSS APTASETAAI ADSKSLTDEK NIETLDLPRH
101: EVIRRLRILK QPMTLFGEDD QARLDRLKYV LKEGLFDVDS DVTDGQTNDF LRDISELKKR QKSGIMMGDR KRKKSSRDEE GDRGEARDDE LSGESSDVDA
201: DKDLKRLKSN FEDLCDEDKI LVFYKKLLIE WKQELDAVEN TERRTAKGKK NVATFKQCAR KKGLPSDIRQ ALMVMVNHCI KRDYLAAMDH YIKLAIGNAP
301: WPIGVTMVGI HERSAREKIH TNSVAHIMND ETTRKYLQSV KRLMTFCQRR YPTMPSKAVE FNSLANGSDL QSLLAEERYF GGDRGQVSEE RLRLMAPQND
401: N

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.