Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0104900-00 | Rice | plasma membrane | 46.06 | 89.56 |
| Zm00001d043584_P001 | Maize | cytosol | 7.65 | 82.54 |
| Zm00001d009915_P001 | Maize | cytosol | 14.5 | 81.41 |
| GSMUA_Achr4P18860_001 | Banana | cytosol | 93.3 | 78.32 |
| Zm00001d012897_P001 | Maize | plastid | 25.39 | 77.88 |
| Zm00001d015676_P001 | Maize | cytosol | 15.75 | 76.7 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 95.95 | 76.48 |
| GSMUA_Achr5P08520_001 | Banana | plastid | 95.81 | 76.23 |
| GSMUA_Achr4P16770_001 | Banana | cytosol | 95.66 | 75.63 |
| Os12t0104800-01 | Rice | cytosol | 6.7 | 74.59 |
| KXG22761 | Sorghum | plastid | 92.05 | 73.16 |
| EES07849 | Sorghum | plastid | 91.98 | 73.14 |
| Zm00001d044614_P086 | Maize | plastid | 91.76 | 72.8 |
| Zm00001d023218_P064 | Maize | plastid | 91.24 | 72.14 |
| TraesCS4A01G182300.1 | Wheat | extracellular, golgi | 90.8 | 71.95 |
| TraesCS4D01G130900.1 | Wheat | golgi, unclear | 90.8 | 71.95 |
| TraesCS5A01G153500.1 | Wheat | golgi, unclear | 90.21 | 71.78 |
| TraesCS5D01G158800.1 | Wheat | plastid | 90.21 | 71.78 |
| TraesCS5B01G152300.1 | Wheat | unclear | 90.14 | 71.72 |
| GSMUA_Achr5P14240_001 | Banana | cytosol, plasma membrane, plastid | 91.32 | 71.2 |
| TraesCS4B01G136100.2 | Wheat | golgi, unclear | 90.73 | 71.19 |
| Zm00001d005090_P106 | Maize | plastid | 90.58 | 70.79 |
| Zm00001d052308_P046 | Maize | cytosol, plastid | 89.04 | 69.5 |
| HORVU4Hr1G024710.4 | Barley | plastid | 90.8 | 69.29 |
| HORVU5Hr1G048010.1 | Barley | plastid | 90.07 | 67.89 |
| Zm00001d026086_P002 | Maize | cytosol | 10.74 | 61.6 |
| Zm00001d012509_P003 | Maize | cytosol | 16.04 | 50.82 |
| Os12t0104766-00 | Rice | plasma membrane | 13.69 | 32.18 |
| Os11t0104866-00 | Rice | plasma membrane | 13.69 | 32.18 |
| GSMUA_Achr4P18870_001 | Banana | peroxisome, plasma membrane, plastid | 0.88 | 9.38 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.22 | 3.49 |
| GSMUA_AchrUn_... | Banana | cytosol | 1.03 | 3.36 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:1.25.40.30 | Gene3D:1.25.40.730 | MapMan:22.1.1.1 | InterPro:ARM-type_fold | InterPro:Clathrin_H-chain/VPS_repeat |
| InterPro:Clathrin_H-chain_linker | InterPro:Clathrin_heavy_chain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005905 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 |
| GO:GO:0030659 | GO:GO:0031410 | GO:GO:0032051 | GO:GO:0048268 | GO:GO:0071439 | EnsemblPlantsGene:GSMUA_AchrUn_randomG09700_001 |
| EnsemblPlants:GSMUA_AchrUn_randomP09700_001 | EnsemblPlants:GSMUA_AchrUn_randomT09700_001 | InterPro:IPR000547 | InterPro:IPR011990 | InterPro:IPR012331 | UniProt:M0U7T0 |
| PFAM:PF00637 | PFAM:PF13838 | PIRSF:PIRSF002290 | PFscan:PS50236 | PANTHER:PTHR10292 | PANTHER:PTHR10292:SF1 |
| SMART:SM00299 | SUPFAM:SSF48371 | SignalP:SignalP-noTM | InterPro:TPR-like_helical_dom_sf | UniParc:UPI000294C05D | SEG:seg |
Description
Clathrin heavy chain 1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG09700_001]
Coordinates
chrchrUn_random:+:45882353..45890255
Molecular Weight (calculated)
155239.0 Da
IEP (calculated)
4.939
GRAVY (calculated)
-0.143
Length
1359 amino acids
Sequence
(BLAST)
(BLAST)
0001: MFVINRYCGI LSTYQLLLLC IQVVQRFQEL FSQTKYKEAA ELAAESPQGI LRTPETVAKF QSVPVQAGQT PPLLQYFGTL LTKGKLNAFE SLELSRLVVN
0101: QNKKNLLENW LAEDKLECSE ELGDLVKTVD NDLALKIYIK ARATPKVVAA FAERREFDKI LIYSKQVGYT PDYLFLLQTI LRSDPQGAVN FALMMSQMDG
0201: GCPVDYNTIT DLFLQRNMIR EATAFLLDVL KPNLPEHAFL QTKVLEINLV TYPNVADAIL ANGMFSHYDR PRIAQLCEKA GLYVRALQHY SELPDIKRVI
0301: VNTHAIEPQI LRSNSLQALV EFFGTLSREW ALECMKDLLL VNLRGNLQII VQTAKEYSEQ LGVDACIKLF EQFKSYEGLY FFLGFYLSSS EDPDIHFKYI
0401: EAAAKTGQLK EVERVTRESN FYDPEKTKNF LMEAKLPDAR PLINVCDRFG FVPDLTHYLY TNNMLRYIEG YVQKVNPGNA PLVVGQLLDD ECPEDFIKGL
0501: ILSVRSLLPV EPLVAECEKR NRLRLLTQFL EHLVSEGSQD VHVHNALGMI IIDSNNNPEH FLTTNPYYDS RVVGKYCEKR DPTLAVVAYR RGQCDDELIN
0601: VTNKNSLFKL QARYVVERMD ADLWEKVLHP ENEYRRQLID QVVSTALPES KSPEQVSAAV KAFMTADLPH ELIELLEKIV LQNSAFSGNF NLQNLLILTA
0701: IKADPPRVMD YINRLDNFDG PAVGEVAVEA QLYEEAFAIF KKFNLNVQAV NVLLDNIQSV ERAVEFAFRV EEDAVWSQVA KAQLRQGLVS DAIESFIRAD
0801: DETQFLDVIR AAEDANVYHD LVKYLLMVRQ KVKEPKVDGE LIFAYAKIDR LGEIEEFILM PNVANLQNVG DRLFDDALYE AAKIIFAFIS NWAKLAITLV
0901: KLKQFQGAVD AARKANSSKT WKEVCFACVD AEEFRLAQIC GLNVIIQVDD LEEVSDYYQN KGCFNELISL MESGLGLERA HMGIFTELGV LYARYRPEKL
1001: MEHIKLFSTR LNIPKLIRVC DEQQHWKELT YLYIQYDEFD NAATTIMNHS PDAWDHMQFK DVIVKVANVE LYYKAVHFYL QEHPDLINDV LHVLALRVDH
1101: TRVVDIMRKA GHLHLVKPYM VAVQSNNVAA VNEALNEIYV EEEDYDRLRE SVDLHDNFDQ IGLAQRIEKH ELLEMRRIAA YIYKKAGRWK QSIALSKKDN
1201: LYKDAMETCS QSGDRELSEE LLVFFIEQGK KECFASCLFI CYELIRPDVA LELAWMNNMI DFAFPYLLQF IREYTSKVDE LVKYKIEAQN EVKSKEKEEK
1301: DLVAQQNMYA QLLPLALPAP SMPGMGGPNA GGPYTAPAPM AGMGMPPMPP FGMPPMGSY
0101: QNKKNLLENW LAEDKLECSE ELGDLVKTVD NDLALKIYIK ARATPKVVAA FAERREFDKI LIYSKQVGYT PDYLFLLQTI LRSDPQGAVN FALMMSQMDG
0201: GCPVDYNTIT DLFLQRNMIR EATAFLLDVL KPNLPEHAFL QTKVLEINLV TYPNVADAIL ANGMFSHYDR PRIAQLCEKA GLYVRALQHY SELPDIKRVI
0301: VNTHAIEPQI LRSNSLQALV EFFGTLSREW ALECMKDLLL VNLRGNLQII VQTAKEYSEQ LGVDACIKLF EQFKSYEGLY FFLGFYLSSS EDPDIHFKYI
0401: EAAAKTGQLK EVERVTRESN FYDPEKTKNF LMEAKLPDAR PLINVCDRFG FVPDLTHYLY TNNMLRYIEG YVQKVNPGNA PLVVGQLLDD ECPEDFIKGL
0501: ILSVRSLLPV EPLVAECEKR NRLRLLTQFL EHLVSEGSQD VHVHNALGMI IIDSNNNPEH FLTTNPYYDS RVVGKYCEKR DPTLAVVAYR RGQCDDELIN
0601: VTNKNSLFKL QARYVVERMD ADLWEKVLHP ENEYRRQLID QVVSTALPES KSPEQVSAAV KAFMTADLPH ELIELLEKIV LQNSAFSGNF NLQNLLILTA
0701: IKADPPRVMD YINRLDNFDG PAVGEVAVEA QLYEEAFAIF KKFNLNVQAV NVLLDNIQSV ERAVEFAFRV EEDAVWSQVA KAQLRQGLVS DAIESFIRAD
0801: DETQFLDVIR AAEDANVYHD LVKYLLMVRQ KVKEPKVDGE LIFAYAKIDR LGEIEEFILM PNVANLQNVG DRLFDDALYE AAKIIFAFIS NWAKLAITLV
0901: KLKQFQGAVD AARKANSSKT WKEVCFACVD AEEFRLAQIC GLNVIIQVDD LEEVSDYYQN KGCFNELISL MESGLGLERA HMGIFTELGV LYARYRPEKL
1001: MEHIKLFSTR LNIPKLIRVC DEQQHWKELT YLYIQYDEFD NAATTIMNHS PDAWDHMQFK DVIVKVANVE LYYKAVHFYL QEHPDLINDV LHVLALRVDH
1101: TRVVDIMRKA GHLHLVKPYM VAVQSNNVAA VNEALNEIYV EEEDYDRLRE SVDLHDNFDQ IGLAQRIEKH ELLEMRRIAA YIYKKAGRWK QSIALSKKDN
1201: LYKDAMETCS QSGDRELSEE LLVFFIEQGK KECFASCLFI CYELIRPDVA LELAWMNNMI DFAFPYLLQF IREYTSKVDE LVKYKIEAQN EVKSKEKEEK
1301: DLVAQQNMYA QLLPLALPAP SMPGMGGPNA GGPYTAPAPM AGMGMPPMPP FGMPPMGSY
0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSKIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY
Arabidopsis Description
CHC2Clathrin heavy chain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WLB5]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.