Factsheet for Os02t0269200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0148500-01
Os03t0808300-01
Os05t0121800-01
Os05t0337400-01
Os06t0698748-02
Os07t0208600-01
Os07t0569100-01
Os08t0516900-01
Os09t0499000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16120.1	Os06t0698748-02	AT2G24550.1	21798944
AT3G16120.1	Os08t0516900-01	AT2G24550.1	21798944
AT3G16120.1	Os09t0499000-01	AT2G24550.1	21798944
AT3G16120.1	Os02t0148500-01	AT3G21175.1	21798944
AT3G16120.1	Os05t0121800-01	AT3G53320.1	21798944
AT3G16120.1	Os03t0808300-01	AT3G57540.1	21798944
AT3G16120.1	Os07t0208600-01	AT3G57540.1	21798944
AT3G16120.1	Os07t0569100-01	AT3G57540.1	21798944
AT3G16120.1	Os05t0337400-01	AT5G14910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06648	Sorghum	cytosol	92.93	92.93
TraesCS4A01G427300.1	Wheat	cytosol	88.89	83.81
TraesCS7D01G056400.1	Wheat	cytosol	85.86	80.95
TraesCS7A01G061500.1	Wheat	cytosol	85.86	80.95
Zm00001d016016_P001	Maize	cytosol	90.91	75.0
AT1G52245.1	Thale cress	cytosol	67.68	71.28
Bra014318.1-P	Field mustard	cytosol	67.68	71.28
CDY02551	Canola	cytosol	67.68	71.28
Solyc12g044240.1.1	Tomato	cytosol	67.68	71.28
Bra018957.1-P	Field mustard	cytosol	66.67	70.21
PGSC0003DMT400019607	Potato	cytosol	66.67	70.21
Bra027190.1-P	Field mustard	cytosol	65.66	69.89
CDX97722	Canola	cytosol	65.66	69.89
CDY30135	Canola	cytosol	65.66	69.89
GSMUA_Achr7P25190_001	Banana	cytosol	65.66	69.89
AT3G16120.1	Thale cress	cytosol	63.64	67.74
Solyc03g120690.2.1	Tomato	cytosol	63.64	67.02
PGSC0003DMT400006527	Potato	cytosol	62.63	65.96
TraesCS4A01G428300.1	Wheat	cytosol	88.89	65.67
KRH60274	Soybean	cytosol	61.62	65.59
KRH09878	Soybean	cytosol	62.63	65.26
KRH41561	Soybean	cytosol	60.61	64.52
VIT_09s0002g04280.t01	Wine grape	cytosol	61.62	64.21
KRH23441	Soybean	cytosol	61.62	64.21
VIT_11s0016g03770.t01	Wine grape	cytosol	58.59	60.42
HORVU7Hr1G011400.2	Barley	plastid	88.89	54.32
CDY47528	Canola	cytosol	60.61	46.15
Os01t0256400-01	Rice	cytosol, nucleus	32.32	24.62
Os02t0733001-00	Rice	cytosol, mitochondrion, peroxisome	35.35	21.88
Os04t0462600-01	Rice	cytosol	38.38	20.0
Os02t0580400-01	Rice	cytosol	37.37	18.59
Os01t0555600-00	Rice	cytosol	37.37	17.37
Os06t0492700-00	Rice	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	19.19	13.77

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	EntrezGene:4328975	ProteinID:BAD28635.1	ProteinID:BAF08430.1	ProteinID:BAS78043.1
InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	ProteinID:EEE56706.1	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005868	GO:GO:0005874	GO:GO:0006810	GO:GO:0007017	GO:GO:0008092
GO:GO:0008150	GO:GO:0008574	GO:GO:0009987	GO:GO:0010970	GO:GO:0016043	GO:GO:0016787
GO:GO:0030286	GO:GO:0045505	GO:GO:0051959	GO:GO:0060271	GO:GO:2000582	InterPro:IPR037177
EnsemblPlantsGene:Os02g0269200	EnsemblPlants:Os02t0269200-01	PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF48	UniProt:Q6ERT5
SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI00003CE764	RefSeq:XP_015623481.1	RefSeq:XP_015623482.1	SEG:seg

Description

Dynein light chain, type 1 family protein. (Os02t0269200-01)

Coordinates

chr2:+:9641620..9642458

Molecular Weight (calculated)

10617.7 Da

IEP (calculated)

7.346

GRAVY (calculated)

0.314

Length

99 amino acids

Sequence
(BLAST)

1: MLEGKARVED TDMPARMQAA ATSAASRALD LFDVADCRAI AGHIKAEFDK RYGVGWQCVV GANFGCFFTH TSGTFIYFSL ERLSFLLFKA AAAAAIAAS

Best Arabidopsis Sequence Match ( AT1G52245.1 )
(BLAST)

1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP

Arabidopsis Description

At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.