Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 4
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
19621931
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0435300-00 | |
| Os07t0587500-01 | |
| Os11t0498400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G15930.1 | Os03t0435300-00 | AT3G01400.1 | 21798944 |
| AT4G15930.1 | Os07t0587500-01 | AT3G01400.1 | 21798944 |
| AT4G15930.1 | Os11t0498400-01 | AT5G14140.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008330_P001 | Maize | mitochondrion | 80.77 | 86.07 |
| EES00507 | Sorghum | cytosol | 85.38 | 85.38 |
| Zm00001d040291_P001 | Maize | cytosol, mitochondrion | 83.08 | 84.38 |
| GSMUA_Achr11P... | Banana | cytosol | 47.69 | 80.52 |
| Bra012751.1-P | Field mustard | cytosol | 46.92 | 79.22 |
| GSMUA_Achr8P30040_001 | Banana | cytosol | 46.92 | 79.22 |
| TraesCS3D01G180700.1 | Wheat | cytosol | 80.0 | 73.76 |
| TraesCS3A01G175300.1 | Wheat | cytosol | 80.0 | 73.76 |
| TraesCS3B01G205000.1 | Wheat | cytosol | 79.23 | 73.05 |
| VIT_05s0077g02110.t01 | Wine grape | cytosol | 60.0 | 66.67 |
| KRH37076 | Soybean | cytosol | 59.23 | 65.25 |
| PGSC0003DMT400029467 | Potato | extracellular | 59.23 | 64.71 |
| KRH12076 | Soybean | cytosol | 60.0 | 63.93 |
| Solyc01g066590.2.1 | Tomato | cytosol, extracellular | 58.46 | 63.87 |
| CDY24919 | Canola | cytosol | 60.0 | 62.9 |
| Bra038059.1-P | Field mustard | cytosol | 60.0 | 62.9 |
| CDY09728 | Canola | cytosol | 58.46 | 62.81 |
| AT4G15930.1 | Thale cress | cytosol | 59.23 | 62.6 |
| CDY57865 | Canola | cytosol | 58.46 | 62.3 |
| CDX90554 | Canola | cytosol | 57.69 | 61.98 |
| KRH12077 | Soybean | cytosol | 57.69 | 53.96 |
| GSMUA_AchrUn_... | Banana | cytosol | 34.62 | 50.56 |
| KRH37077 | Soybean | mitochondrion | 60.77 | 50.32 |
| Os06t0492700-00 | Rice | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 51.54 | 48.55 |
| Os02t0269200-01 | Rice | cytosol | 24.62 | 32.32 |
| Os02t0733001-00 | Rice | cytosol, mitochondrion, peroxisome | 30.0 | 24.38 |
| Os02t0580400-01 | Rice | cytosol | 31.54 | 20.6 |
| Os04t0462600-01 | Rice | cytosol | 29.23 | 20.0 |
| Os01t0555600-00 | Rice | cytosol | 30.77 | 18.78 |
| KRH40946 | Soybean | plastid | 8.46 | 9.48 |
Protein Annotations
| Gene3D:3.30.740.10 | MapMan:35.1 | EntrezGene:4327718 | EMBL:AK107950 | ProteinID:BAA85215.1 | ProteinID:BAF04539.1 |
| ProteinID:BAS71392.1 | InterPro:DLC_sf | InterPro:Dynein_light_1/2_CS | InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0003674 | GO:GO:0003774 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005868 | GO:GO:0005874 | GO:GO:0005875 | GO:GO:0006810 |
| GO:GO:0007017 | GO:GO:0008092 | GO:GO:0008150 | GO:GO:0008574 | GO:GO:0009987 | GO:GO:0010970 |
| GO:GO:0016043 | GO:GO:0016787 | GO:GO:0030286 | GO:GO:0045505 | GO:GO:0051959 | GO:GO:0060271 |
| GO:GO:2000582 | InterPro:IPR037177 | EnsemblPlantsGene:Os01g0256400 | EnsemblPlants:Os01t0256400-01 | PFAM:PF01221 | ScanProsite:PS01239 |
| PANTHER:PTHR11886 | UniProt:Q9SDK0 | SMART:SM01375 | SUPFAM:SSF54648 | UniParc:UPI00000A143E | RefSeq:XP_015621084.1 |
| SEG:seg | : | : | : | : | : |
Description
Similar to Dynein light chain 1 protein DLC-1 (Fragment). (Os01t0256400-01)
Coordinates
chr1:+:8540755..8544460
Molecular Weight (calculated)
14168.7 Da
IEP (calculated)
8.457
GRAVY (calculated)
-0.483
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDEATRRLA GGGGGGAALR ASSDVDRKPA AAGSPPPGAA AAAGHKIQLK SADMKEEMRQ EAFDIARVAF EKHTMEKDIA EYIKKEFDKN HGPTWHCIVG
101: RNFGSYVTHE TNYFVYFYID SKAVLLFKSG
101: RNFGSYVTHE TNYFVYFYID SKAVLLFKSG
001: MSDGRRKKSV NGGAPAQTIL DDRRSSLPEV EASPPAGKRA VIKSADMKDD MQKEAIEIAI SAFEKYSVEK DIAENIKKEF DKKHGATWHC IVGRNFGSYV
101: THETNHFVYF YLDQKAVLLF KSG
101: THETNHFVYF YLDQKAVLLF KSG
Arabidopsis Description
At4g15930 [Source:UniProtKB/TrEMBL;Acc:Q84VW0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.