Factsheet for Solyc01g066590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g094170.2.1
Solyc04g077850.2.1
Solyc12g088360.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15930.1	Solyc04g077850.2.1	AT3G01400.1	21798944
AT4G15930.1	Solyc12g088360.1.1	AT3G01400.1	21798944
AT4G15930.1	Solyc02g094170.2.1	AT5G14140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029467	Potato	extracellular	98.32	98.32
Bra012751.1-P	Field mustard	cytosol	52.94	81.82
GSMUA_Achr11P...	Banana	cytosol	51.26	79.22
GSMUA_Achr8P30040_001	Banana	cytosol	50.42	77.92
KRH12076	Soybean	cytosol	77.31	75.41
KRH37076	Soybean	cytosol	73.95	74.58
VIT_05s0077g02110.t01	Wine grape	cytosol	68.91	70.09
CDY57865	Canola	cytosol	66.39	64.75
CDY24919	Canola	cytosol	67.23	64.52
Bra038059.1-P	Field mustard	cytosol	67.23	64.52
CDY09728	Canola	cytosol	65.55	64.46
CDX90554	Canola	cytosol	64.71	63.64
AT4G15930.1	Thale cress	cytosol	65.55	63.41
KRH12077	Soybean	cytosol	73.95	63.31
Zm00001d008330_P001	Maize	mitochondrion	60.5	59.02
KRH37077	Soybean	mitochondrion	77.31	58.6
Os01t0256400-01	Rice	cytosol, nucleus	63.87	58.46
Zm00001d040291_P001	Maize	cytosol, mitochondrion	62.18	57.81
EES00507	Sorghum	cytosol	63.03	57.69
TraesCS3A01G175300.1	Wheat	cytosol	66.39	56.03
TraesCS3B01G205000.1	Wheat	cytosol	66.39	56.03
TraesCS3D01G180700.1	Wheat	cytosol	66.39	56.03
GSMUA_AchrUn_...	Banana	cytosol	31.09	41.57
OQU83188	Sorghum	plastid	42.02	39.68
Solyc12g044240.1.1	Tomato	cytosol	30.25	38.3
Solyc03g120690.2.1	Tomato	cytosol	28.57	36.17
Os06t0492700-00	Rice	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	39.5	34.06
Solyc07g063610.2.1	Tomato	cytosol	31.93	33.63
Solyc01g005460.2.1	Tomato	cytosol	31.09	28.46
Solyc07g063180.2.1	Tomato	cytosol	34.45	27.89
Solyc12g006630.1.1	Tomato	cytosol	33.61	17.86
Solyc03g113540.2.1	Tomato	cytosol, plastid	35.29	16.34
Solyc06g071180.2.1	Tomato	cytosol	34.45	15.24

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.1	InterPro:DLC_sf	InterPro:Dynein_light_1/2_CS	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674
GO:GO:0003774	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005868	GO:GO:0005874	GO:GO:0005875
GO:GO:0006810	GO:GO:0007017	GO:GO:0008092	GO:GO:0008150	GO:GO:0008574	GO:GO:0009987
GO:GO:0010970	GO:GO:0016043	GO:GO:0016787	GO:GO:0030286	GO:GO:0045505	GO:GO:0051959
GO:GO:0060271	GO:GO:2000582	InterPro:IPR037177	UniProt:K4AWR0	PFAM:PF01221	ScanProsite:PS01239
PANTHER:PTHR11886	SMART:SM01375	SUPFAM:SSF54648	EnsemblPlantsGene:Solyc01g066590.2	EnsemblPlants:Solyc01g066590.2.1	UniParc:UPI0002762B57

Description

No Description!

Coordinates

chr1:-:74695517..74699072

Molecular Weight (calculated)

13065.5 Da

IEP (calculated)

8.997

GRAVY (calculated)

-0.482

Length

119 amino acids

Sequence
(BLAST)

001: MSEDAKKSGG APAVKPTSDD RRISSGSVPS PTGTKVTIKS ADMKPDVQKE AVDIAIAAFE KHNVEKDVAE LIKKEFDKKY GPTWHCIVGK NFGSYVTHET
101: NHFVYFYLDS KAVLLFKSG

Best Arabidopsis Sequence Match ( AT4G15930.1 )
(BLAST)

001: MSDGRRKKSV NGGAPAQTIL DDRRSSLPEV EASPPAGKRA VIKSADMKDD MQKEAIEIAI SAFEKYSVEK DIAENIKKEF DKKHGATWHC IVGRNFGSYV
101: THETNHFVYF YLDQKAVLLF KSG

Arabidopsis Description

At4g15930 [Source:UniProtKB/TrEMBL;Acc:Q84VW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.