Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G15930.1 | EER97464 | AT3G01400.1 | 21798944 |
| AT4G15930.1 | OQU83468 | AT5G14140.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES00507 | Sorghum | cytosol | 65.87 | 63.85 |
| Bra012751.1-P | Field mustard | cytosol | 32.54 | 53.25 |
| TraesCS3D01G180700.1 | Wheat | cytosol | 53.97 | 48.23 |
| TraesCS3B01G205000.1 | Wheat | cytosol | 53.97 | 48.23 |
| TraesCS3A01G175300.1 | Wheat | cytosol | 53.97 | 48.23 |
| GSMUA_Achr11P... | Banana | cytosol | 29.37 | 48.05 |
| GSMUA_Achr8P30040_001 | Banana | cytosol | 28.57 | 46.75 |
| VIT_05s0077g02110.t01 | Wine grape | cytosol | 42.86 | 46.15 |
| CDY09728 | Canola | cytosol | 42.86 | 44.63 |
| GSMUA_AchrUn_... | Banana | cytosol | 30.95 | 43.82 |
| CDX90554 | Canola | cytosol | 42.06 | 43.8 |
| AT4G15930.1 | Thale cress | cytosol | 42.06 | 43.09 |
| Os06t0492700-00 | Rice | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 46.03 | 42.03 |
| Solyc01g066590.2.1 | Tomato | cytosol, extracellular | 39.68 | 42.02 |
| PGSC0003DMT400029467 | Potato | extracellular | 39.68 | 42.02 |
| Bra038059.1-P | Field mustard | cytosol | 40.48 | 41.13 |
| CDY24919 | Canola | cytosol | 40.48 | 41.13 |
| CDY57865 | Canola | cytosol | 39.68 | 40.98 |
| KRH12076 | Soybean | cytosol | 39.68 | 40.98 |
| KRH37076 | Soybean | cytosol | 38.1 | 40.68 |
| KRH12077 | Soybean | cytosol | 38.1 | 34.53 |
| KRH37077 | Soybean | mitochondrion | 40.48 | 32.48 |
| KXG33416 | Sorghum | cytosol | 20.63 | 27.96 |
| EES06648 | Sorghum | cytosol | 21.43 | 27.27 |
| EER97375 | Sorghum | cytosol | 24.6 | 27.19 |
| EES05573 | Sorghum | cytosol | 26.19 | 20.89 |
| OQU86998 | Sorghum | cytosol, mitochondrion | 26.98 | 17.99 |
| EES07042 | Sorghum | cytosol, mitochondrion | 26.19 | 16.34 |
| EES10953 | Sorghum | plastid | 26.19 | 10.09 |
| KRH40946 | Soybean | plastid | 3.97 | 4.31 |
Protein Annotations
| Gene3D:3.30.740.10 | MapMan:35.1 | UniProt:A0A1Z5RHH6 | InterPro:DLC_sf | InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0003674 |
| GO:GO:0003774 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0030286 | InterPro:IPR037177 | EnsemblPlants:OQU83188 | ProteinID:OQU83188 | ProteinID:OQU83188.1 | PFAM:PF01221 |
| PANTHER:PTHR11886 | SMART:SM01375 | EnsemblPlantsGene:SORBI_3005G089900 | SUPFAM:SSF54648 | UniParc:UPI000B8BAD09 | SEG:seg |
Description
hypothetical protein
Coordinates
chr5:-:12971151..12971751
Molecular Weight (calculated)
14004.8 Da
IEP (calculated)
9.634
GRAVY (calculated)
-0.460
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVPHMVRH NDGSSLFLLA RRRGRTSSED RKPVGAGSPP PAAAAAVAAA HKIQLKSADM KEEMQQEAFE IAHVAFKKHS MEKDIAEYIK KEFDKNYGPT
101: WHCIVGRNFG NALLPTPLWE PLLNLN
101: WHCIVGRNFG NALLPTPLWE PLLNLN
1: MSDGRRKKSV NGGAPAQTIL DDRRSSLPEV EASPPAGKRA VIKSADMKDD MQKEAIEIAI SAFEKYSVEK DIAENIKKEF DKKHGATWHC IVGRNFG
Arabidopsis Description
At4g15930 [Source:UniProtKB/TrEMBL;Acc:Q84VW0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.