Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d007339_P001 | Maize | nucleus | 69.9 | 91.33 |
| TraesCS3B01G109000.1 | Wheat | nucleus | 58.93 | 73.57 |
| TraesCS3D01G093600.1 | Wheat | nucleus | 58.93 | 73.33 |
| TraesCS3A01G093300.1 | Wheat | nucleus | 58.67 | 73.02 |
| Os11t0498400-01 | Rice | cytosol | 56.38 | 72.22 |
| GSMUA_Achr6P16600_001 | Banana | cytosol | 45.92 | 63.83 |
| VIT_14s0068g01930.t01 | Wine grape | nucleus | 38.01 | 58.89 |
| KRH06937 | Soybean | cytosol | 37.24 | 57.48 |
| PGSC0003DMT400052062 | Potato | cytosol | 36.99 | 57.09 |
| Solyc02g094170.2.1 | Tomato | cytosol | 36.73 | 56.69 |
| CDX70544 | Canola | nucleus | 34.95 | 52.49 |
| Bra006240.1-P | Field mustard | nucleus | 34.18 | 51.74 |
| CDX78562 | Canola | nucleus | 34.18 | 51.74 |
| AT5G14140.1 | Thale cress | nucleus | 34.44 | 51.14 |
| KRG94534 | Soybean | nucleus | 8.67 | 40.96 |
Protein Annotations
| EnsemblPlants:OQU83468 | EnsemblPlantsGene:SORBI_3005G121100 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR21354 | ProteinID:OQU83468 | ProteinID:OQU83468.1 | ScanProsite:PS00028 |
| SEG:seg | SMART:SM00355 | UniParc:UPI000B8B9F9E | UniProt:A0A1Z5RIA5 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr5:+:53356590..53359846
Molecular Weight (calculated)
44040.8 Da
IEP (calculated)
7.794
GRAVY (calculated)
-0.721
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPSNLFFPS ARAAHERIGH TPTRARRETP SLSSPLLSSP AFCLPHCEFE FEFELEPDSS PLSLSLSSLP HAASGGPVRT ARIDRMQQKP DDAMEEAAAA
101: PKAAAVTAGP ELGFWLAARR RLAPDDPFFA AGDLERELLA KHLALDLSED DRDQLEKMEV ASTCTVFCPI AGCGAHLDCL EEFEDHYVTR HTASCSVCSR
201: VYPTSRLLSI HVSEAHDSYF QAKVARGFPM YECLVEGCGM KLKSYKSRLQ HLIDKHQFPK SFEFFKKARA SQRQRQKSQR RQTAHKGEET RDNSMDVDGK
301: GARQTNQRYR QKQHDHNELK ESKQQHKEAK ENEMEVEQKI DELTSAVSKL STADSTPAKV TFGHRRSRGL TFVPRSIRQN KQAASQLEAT ND
101: PKAAAVTAGP ELGFWLAARR RLAPDDPFFA AGDLERELLA KHLALDLSED DRDQLEKMEV ASTCTVFCPI AGCGAHLDCL EEFEDHYVTR HTASCSVCSR
201: VYPTSRLLSI HVSEAHDSYF QAKVARGFPM YECLVEGCGM KLKSYKSRLQ HLIDKHQFPK SFEFFKKARA SQRQRQKSQR RQTAHKGEET RDNSMDVDGK
301: GARQTNQRYR QKQHDHNELK ESKQQHKEAK ENEMEVEQKI DELTSAVSKL STADSTPAKV TFGHRRSRGL TFVPRSIRQN KQAASQLEAT ND
001: MATGMAVDTV GELGFPYWNP IRRRFPPDSP FFASGNVERE LLAKQVTLDF TEDEINHLHK FVEIETRRIS CPIVGCPERL KSLDHFEDHY NARHTASCSV
101: CSRVYPTSRL LSIHISEAHD SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK LQRQHVSKLK HEEDKEAASS
201: DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG LTFVPRSVHR EKRTESSSAP GPTN
101: CSRVYPTSRL LSIHISEAHD SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK LQRQHVSKLK HEEDKEAASS
201: DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG LTFVPRSVHR EKRTESSSAP GPTN
Arabidopsis Description
Nucleic acid binding / zinc ion binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WRF4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.