CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006240.1-P	Field mustard	nucleus	99.61	99.61
CDX70544	Canola	nucleus	96.53	95.79
AT5G14140.1	Thale cress	nucleus	89.19	87.5
VIT_14s0068g01930.t01	Wine grape	nucleus	64.48	66.01
KRH06937	Soybean	cytosol	62.55	63.78
Solyc02g094170.2.1	Tomato	cytosol	57.53	58.66
PGSC0003DMT400052062	Potato	cytosol	57.14	58.27
GSMUA_Achr6P16600_001	Banana	cytosol	56.76	52.13
KRG94534	Soybean	nucleus	15.44	48.19
Os11t0498400-01	Rice	cytosol	53.67	45.42
Zm00001d007339_P001	Maize	nucleus	51.35	44.33
TraesCS3B01G109000.1	Wheat	nucleus	52.9	43.63
TraesCS3A01G093300.1	Wheat	nucleus	52.9	43.49
TraesCS3D01G093600.1	Wheat	nucleus	52.51	43.17
OQU83468	Sorghum	plastid	51.74	34.18

Protein Annotations

EnsemblPlants:CDX78562	EnsemblPlantsGene:GSBRNA2T00129972001	GO:A0A078CPB8	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR21354	PFAM:PF00096	ProteinID:CDX78562
ProteinID:CDX78562.1	ScanProsite:PS00028	SEG:seg	SMART:SM00355	UniParc:UPI0004EDD024	MapMan:35.2

Description

BnaA03g04740D

Coordinates

chrLK031815:+:1318207..1319823

Molecular Weight (calculated)

29585.1 Da

IEP (calculated)

9.407

GRAVY (calculated)

-0.687

Length

259 amino acids

Sequence
(BLAST)

001: MAMGMAELGF PYWNPLRRRF PPDSPFFASG NVERELLAKQ VALDFTEDEI NNLQIIVETE SRRISCPIVG CPERLKSLDN FEDHYKARHT ASCSVCSRVY
101: PTSRLLSIHI SEAHDSFFQA KVARGYDMYE CLVEGCGLKF KNYKARHRHL VDKHKFPTTF EFFKRTQLSK KRREKLQKQR VPKLKHEEDK EEASSDAMEV
201: EDKASLDGLV SALSTLTTSD TTPSNVSFGR RHGRGLTFVP RSVHREKPTN SSSTPGPKT

Best Arabidopsis Sequence Match ( AT5G14140.1 )
(BLAST)

001: MATGMAVDTV GELGFPYWNP IRRRFPPDSP FFASGNVERE LLAKQVTLDF TEDEINHLHK FVEIETRRIS CPIVGCPERL KSLDHFEDHY NARHTASCSV
101: CSRVYPTSRL LSIHISEAHD SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK LQRQHVSKLK HEEDKEAASS
201: DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG LTFVPRSVHR EKRTESSSAP GPTN

Arabidopsis Description

Nucleic acid binding / zinc ion binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WRF4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.