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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plastid 1
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78562 Canola nucleus 95.79 96.53
AT5G14140.1 Thale cress nucleus 89.27 88.26
VIT_14s0068g01930.t01 Wine grape nucleus 64.37 66.4
KRH06937 Soybean cytosol 62.07 63.78
Solyc02g094170.2.1 Tomato cytosol 57.47 59.06
PGSC0003DMT400052062 Potato cytosol 57.09 58.66
GSMUA_Achr6P16600_001 Banana cytosol 56.32 52.13
KRG94534 Soybean nucleus 15.71 49.4
Os11t0498400-01 Rice cytosol 54.02 46.08
Zm00001d007339_P001 Maize nucleus 52.11 45.33
TraesCS3B01G109000.1 Wheat nucleus 52.87 43.95
TraesCS3A01G093300.1 Wheat nucleus 52.49 43.49
TraesCS3D01G093600.1 Wheat nucleus 52.11 43.17
OQU83468 Sorghum plastid 52.49 34.95
Protein Annotations
EnsemblPlants:CDX70544EnsemblPlantsGene:GSBRNA2T00140381001Gene3D:3.30.160.60GO:A0A078C2Z2GO:GO:0003674GO:GO:0003676
GO:GO:0005488InterPro:IPR013087InterPro:Znf_C2H2_typencoils:CoilPANTHER:PTHR21354PFAM:PF00096
ProteinID:CDX70544ProteinID:CDX70544.1ScanProsite:PS00028SEG:segSMART:SM00355UniParc:UPI0004EE5645
MapMan:35.2:::::
Description
BnaC03g06280D
Coordinates
chrLK031791:+:964901..966487
Molecular Weight (calculated)
29751.3 Da
IEP (calculated)
9.415
GRAVY (calculated)
-0.674
Length
261 amino acids
Sequence
(BLAST)
001: MAMGMAVGEL GFPYWNPLRR RFPPDSPFFA SGNVERELLA KQVALDFTED EITNLQTIVE TESRRISCPI VGCPERLKSL DNFEDHYKTR HTASCSVCSR
101: VYPTSRLLSI HISEAHDSFF QAKVARGYDM YECLVEGCGL KFKSYKARHR HLIDKHKFPT TFEFFKRTQL SKKRREKLQR QRVPKLKHEE DKEEASSDAM
201: EVEDKASLDG LVSALSTLTT SDTTPSNVSF GRRHGRGLTF VPRSVHREKP TNSSSTPGSK T
Best Arabidopsis Sequence Match ( AT5G14140.1 )
(BLAST)
001: MATGMAVDTV GELGFPYWNP IRRRFPPDSP FFASGNVERE LLAKQVTLDF TEDEINHLHK FVEIETRRIS CPIVGCPERL KSLDHFEDHY NARHTASCSV
101: CSRVYPTSRL LSIHISEAHD SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK LQRQHVSKLK HEEDKEAASS
201: DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG LTFVPRSVHR EKRTESSSAP GPTN
Arabidopsis Description
Nucleic acid binding / zinc ion binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WRF4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.