Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX78562 | Canola | nucleus | 95.79 | 96.53 |
AT5G14140.1 | Thale cress | nucleus | 89.27 | 88.26 |
VIT_14s0068g01930.t01 | Wine grape | nucleus | 64.37 | 66.4 |
KRH06937 | Soybean | cytosol | 62.07 | 63.78 |
Solyc02g094170.2.1 | Tomato | cytosol | 57.47 | 59.06 |
PGSC0003DMT400052062 | Potato | cytosol | 57.09 | 58.66 |
GSMUA_Achr6P16600_001 | Banana | cytosol | 56.32 | 52.13 |
KRG94534 | Soybean | nucleus | 15.71 | 49.4 |
Os11t0498400-01 | Rice | cytosol | 54.02 | 46.08 |
Zm00001d007339_P001 | Maize | nucleus | 52.11 | 45.33 |
TraesCS3B01G109000.1 | Wheat | nucleus | 52.87 | 43.95 |
TraesCS3A01G093300.1 | Wheat | nucleus | 52.49 | 43.49 |
TraesCS3D01G093600.1 | Wheat | nucleus | 52.11 | 43.17 |
OQU83468 | Sorghum | plastid | 52.49 | 34.95 |
Protein Annotations
EnsemblPlants:CDX70544 | EnsemblPlantsGene:GSBRNA2T00140381001 | Gene3D:3.30.160.60 | GO:A0A078C2Z2 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR21354 | PFAM:PF00096 |
ProteinID:CDX70544 | ProteinID:CDX70544.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | UniParc:UPI0004EE5645 |
MapMan:35.2 | : | : | : | : | : |
Description
BnaC03g06280D
Coordinates
chrLK031791:+:964901..966487
Molecular Weight (calculated)
29751.3 Da
IEP (calculated)
9.415
GRAVY (calculated)
-0.674
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMGMAVGEL GFPYWNPLRR RFPPDSPFFA SGNVERELLA KQVALDFTED EITNLQTIVE TESRRISCPI VGCPERLKSL DNFEDHYKTR HTASCSVCSR
101: VYPTSRLLSI HISEAHDSFF QAKVARGYDM YECLVEGCGL KFKSYKARHR HLIDKHKFPT TFEFFKRTQL SKKRREKLQR QRVPKLKHEE DKEEASSDAM
201: EVEDKASLDG LVSALSTLTT SDTTPSNVSF GRRHGRGLTF VPRSVHREKP TNSSSTPGSK T
101: VYPTSRLLSI HISEAHDSFF QAKVARGYDM YECLVEGCGL KFKSYKARHR HLIDKHKFPT TFEFFKRTQL SKKRREKLQR QRVPKLKHEE DKEEASSDAM
201: EVEDKASLDG LVSALSTLTT SDTTPSNVSF GRRHGRGLTF VPRSVHREKP TNSSSTPGSK T
001: MATGMAVDTV GELGFPYWNP IRRRFPPDSP FFASGNVERE LLAKQVTLDF TEDEINHLHK FVEIETRRIS CPIVGCPERL KSLDHFEDHY NARHTASCSV
101: CSRVYPTSRL LSIHISEAHD SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK LQRQHVSKLK HEEDKEAASS
201: DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG LTFVPRSVHR EKRTESSSAP GPTN
101: CSRVYPTSRL LSIHISEAHD SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK LQRQHVSKLK HEEDKEAASS
201: DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG LTFVPRSVHR EKRTESSSAP GPTN
Arabidopsis Description
Nucleic acid binding / zinc ion binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WRF4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.