Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g094170.2.1 | Tomato | cytosol | 95.67 | 95.67 |
| VIT_14s0068g01930.t01 | Wine grape | nucleus | 67.32 | 67.59 |
| KRH06937 | Soybean | cytosol | 64.96 | 64.96 |
| Bra006240.1-P | Field mustard | nucleus | 58.27 | 57.14 |
| CDX78562 | Canola | nucleus | 58.27 | 57.14 |
| CDX70544 | Canola | nucleus | 58.66 | 57.09 |
| AT5G14140.1 | Thale cress | nucleus | 57.09 | 54.92 |
| GSMUA_Achr6P16600_001 | Banana | cytosol | 60.24 | 54.26 |
| KRG94534 | Soybean | nucleus | 16.54 | 50.6 |
| Os11t0498400-01 | Rice | cytosol | 58.66 | 48.69 |
| Zm00001d007339_P001 | Maize | nucleus | 57.09 | 48.33 |
| TraesCS3A01G093300.1 | Wheat | nucleus | 57.48 | 46.35 |
| TraesCS3D01G093600.1 | Wheat | nucleus | 57.09 | 46.03 |
| TraesCS3B01G109000.1 | Wheat | nucleus | 56.69 | 45.86 |
| OQU83468 | Sorghum | plastid | 57.09 | 36.99 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400052062 | EnsemblPlantsGene:PGSC0003DMG400020210 | EntrezGene:102606135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR21354 | PGSC:PGSC0003DMG400020210 | RefSeq:XP_006338700.1 | ScanProsite:PS00028 |
| SMART:SM00355 | UniParc:UPI00029654A6 | UniProt:M1BSR1 | MapMan:35.2 | : | : |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020210]
Coordinates
chr2:-:47996240..47999998
Molecular Weight (calculated)
28737.9 Da
IEP (calculated)
9.009
GRAVY (calculated)
-0.652
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMEFETQTQ LGFPFWSPTR RRFGPDDPFF AYGNIQRELL AKQVALDLTE EENQLVQNTI TDEEISNLFC PIIGCGAQMK NLDDFEDHYV TRHTASCSVC
101: SRVYPTSRLL SIHVSEAHDS FFQAKAARGF PMYECLVEGC DVKLKSYKSR QQHLVDKHKF PASYEFFRKA RPSKKQRQKP HHKQASKKTQ ETSSAMQVEE
201: ETIDNLVSAV SKLTTSDSPS AISFGRSRAR GLSFVPRAAN RQRGPVTSTG GTKN
101: SRVYPTSRLL SIHVSEAHDS FFQAKAARGF PMYECLVEGC DVKLKSYKSR QQHLVDKHKF PASYEFFRKA RPSKKQRQKP HHKQASKKTQ ETSSAMQVEE
201: ETIDNLVSAV SKLTTSDSPS AISFGRSRAR GLSFVPRAAN RQRGPVTSTG GTKN
001: MATGMAVDTV GELGFPYWNP IRRRFPPDSP FFASGNVERE LLAKQVTLDF TEDEINHLHK FVEIETRRIS CPIVGCPERL KSLDHFEDHY NARHTASCSV
101: CSRVYPTSRL LSIHISEAHD SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK LQRQHVSKLK HEEDKEAASS
201: DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG LTFVPRSVHR EKRTESSSAP GPTN
101: CSRVYPTSRL LSIHISEAHD SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK LQRQHVSKLK HEEDKEAASS
201: DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG LTFVPRSVHR EKRTESSSAP GPTN
Arabidopsis Description
Nucleic acid binding / zinc ion binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WRF4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.