Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G093300.1 | Wheat | nucleus | 97.46 | 97.46 |
| TraesCS3B01G109000.1 | Wheat | nucleus | 96.51 | 96.82 |
| Zm00001d007339_P001 | Maize | nucleus | 72.38 | 76.0 |
| Os11t0498400-01 | Rice | cytosol | 72.06 | 74.18 |
| GSMUA_Achr6P16600_001 | Banana | cytosol | 58.73 | 65.6 |
| OQU83468 | Sorghum | plastid | 73.33 | 58.93 |
| PGSC0003DMT400052062 | Potato | cytosol | 46.03 | 57.09 |
| Solyc02g094170.2.1 | Tomato | cytosol | 45.71 | 56.69 |
| VIT_14s0068g01930.t01 | Wine grape | nucleus | 45.08 | 56.13 |
| KRH06937 | Soybean | cytosol | 45.08 | 55.91 |
| Bra006240.1-P | Field mustard | nucleus | 43.17 | 52.51 |
| CDX78562 | Canola | nucleus | 43.17 | 52.51 |
| CDX70544 | Canola | nucleus | 43.17 | 52.11 |
| AT5G14140.1 | Thale cress | nucleus | 41.9 | 50.0 |
| KRG94534 | Soybean | nucleus | 10.48 | 39.76 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G093600.1 | EnsemblPlantsGene:TraesCS3D01G093600 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR21354 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:47653820..47656383
Molecular Weight (calculated)
36278.3 Da
IEP (calculated)
7.012
GRAVY (calculated)
-0.990
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQNPAEAME VSAPSEAEAP KDAGPWLGFW EVSRRRLTPD DPFFAAGDME RELLAKHVAL DLSDDDRYQL EKMDVASVSM VCCPIAGCGA HLDCLEDFED
101: HYSTRHTASC SVCSRVYPTS RLLSIHISEA HDSFFQAKVA RGFPMYECLV EGCGEKLKTY KSRQQHLVDK HQFPNSFEFF KRAQPSQRHR QKYHHRRQTA
201: YKGEETRDTV MDVDGKNPRQ SKSRYRPKQH DHKESKEKEH DHKESKENEH HEKEAKESDM EVEQKIDELS FAVSRLSTAD SVPSSITFGH RRARGLTFVP
301: RSIRQNKQVS QPEAN
101: HYSTRHTASC SVCSRVYPTS RLLSIHISEA HDSFFQAKVA RGFPMYECLV EGCGEKLKTY KSRQQHLVDK HQFPNSFEFF KRAQPSQRHR QKYHHRRQTA
201: YKGEETRDTV MDVDGKNPRQ SKSRYRPKQH DHKESKEKEH DHKESKENEH HEKEAKESDM EVEQKIDELS FAVSRLSTAD SVPSSITFGH RRARGLTFVP
301: RSIRQNKQVS QPEAN
001: MATGMAVDTV GELGFPYWNP IRRRFPPDSP FFASGNVERE LLAKQVTLDF TEDEINHLHK FVEIETRRIS CPIVGCPERL KSLDHFEDHY NARHTASCSV
101: CSRVYPTSRL LSIHISEAHD SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK LQRQHVSKLK HEEDKEAASS
201: DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG LTFVPRSVHR EKRTESSSAP GPTN
101: CSRVYPTSRL LSIHISEAHD SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK LQRQHVSKLK HEEDKEAASS
201: DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG LTFVPRSVHR EKRTESSSAP GPTN
Arabidopsis Description
Nucleic acid binding / zinc ion binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WRF4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.