Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d007339_P001 | Maize | nucleus | 72.22 | 73.67 |
| TraesCS3D01G093600.1 | Wheat | nucleus | 74.18 | 72.06 |
| TraesCS3B01G109000.1 | Wheat | nucleus | 73.53 | 71.66 |
| TraesCS3A01G093300.1 | Wheat | nucleus | 73.53 | 71.43 |
| GSMUA_Achr6P16600_001 | Banana | cytosol | 60.13 | 65.25 |
| PGSC0003DMT400052062 | Potato | cytosol | 48.69 | 58.66 |
| VIT_14s0068g01930.t01 | Wine grape | nucleus | 48.37 | 58.5 |
| Solyc02g094170.2.1 | Tomato | cytosol | 48.04 | 57.87 |
| KRH06937 | Soybean | cytosol | 47.71 | 57.48 |
| OQU83468 | Sorghum | plastid | 72.22 | 56.38 |
| CDX70544 | Canola | nucleus | 46.08 | 54.02 |
| Bra006240.1-P | Field mustard | nucleus | 45.42 | 53.67 |
| CDX78562 | Canola | nucleus | 45.42 | 53.67 |
| AT5G14140.1 | Thale cress | nucleus | 44.12 | 51.14 |
| KRG94534 | Soybean | nucleus | 11.11 | 40.96 |
Protein Annotations
| EnsemblPlants:Os11t0498400-01 | EnsemblPlantsGene:Os11g0498400 | EntrezGene:4350555 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR21354 | ProteinID:ABG22491.1 | ProteinID:BAF28301.1 | ProteinID:BAT14123.1 |
| RefSeq:XP_015615475.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | UniParc:UPI0000D89ADA | UniProt:Q0ISL4 |
| MapMan:35.2 | : | : | : | : | : |
Description
Zinc finger, C2H2-like domain containing protein. (Os11t0498400-01)
Coordinates
chr11:+:17722080..17725438
Molecular Weight (calculated)
34921.2 Da
IEP (calculated)
9.059
GRAVY (calculated)
-0.897
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQKPAAEAM EEELKGEAVG PRRPGLGLWL AARRRLAPDD PFFAAGDMER ELLAKQVALD LSEDERYQLE RMEVASANAL LCPISGCGAH LDCLENFEDH
101: YRTRHTASCS VCWRVYPTSR LLSIHISEAH DSFFQAKVAR GFPMYECLVE GCGVKLKSYK SRQQHLLDKH QFPKSFEFFK KARPSQRQRN KNQKQRQTVH
201: KGDETSETLM DVDGKKSSRY MNSRYRPKQH DGKESKENEH SSCKEAKNNE MEVDKQVDEL ASAVSRLSTA DSTPSSISFG HRRSRGLAFV PRSIRQNKQV
301: SQTEPK
101: YRTRHTASCS VCWRVYPTSR LLSIHISEAH DSFFQAKVAR GFPMYECLVE GCGVKLKSYK SRQQHLLDKH QFPKSFEFFK KARPSQRQRN KNQKQRQTVH
201: KGDETSETLM DVDGKKSSRY MNSRYRPKQH DGKESKENEH SSCKEAKNNE MEVDKQVDEL ASAVSRLSTA DSTPSSISFG HRRSRGLAFV PRSIRQNKQV
301: SQTEPK
001: MATGMAVDTV GELGFPYWNP IRRRFPPDSP FFASGNVERE LLAKQVTLDF TEDEINHLHK FVEIETRRIS CPIVGCPERL KSLDHFEDHY NARHTASCSV
101: CSRVYPTSRL LSIHISEAHD SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK LQRQHVSKLK HEEDKEAASS
201: DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG LTFVPRSVHR EKRTESSSAP GPTN
101: CSRVYPTSRL LSIHISEAHD SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK LQRQHVSKLK HEEDKEAASS
201: DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG LTFVPRSVHR EKRTESSSAP GPTN
Arabidopsis Description
Nucleic acid binding / zinc ion binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WRF4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.