Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G093300.1 | Wheat | nucleus | 97.13 | 96.83 |
| TraesCS3D01G093600.1 | Wheat | nucleus | 96.82 | 96.51 |
| Zm00001d007339_P001 | Maize | nucleus | 72.93 | 76.33 |
| Os11t0498400-01 | Rice | cytosol | 71.66 | 73.53 |
| GSMUA_Achr6P16600_001 | Banana | cytosol | 58.92 | 65.6 |
| OQU83468 | Sorghum | plastid | 73.57 | 58.93 |
| VIT_14s0068g01930.t01 | Wine grape | nucleus | 45.86 | 56.92 |
| PGSC0003DMT400052062 | Potato | cytosol | 45.86 | 56.69 |
| Solyc02g094170.2.1 | Tomato | cytosol | 45.54 | 56.3 |
| KRH06937 | Soybean | cytosol | 45.22 | 55.91 |
| Bra006240.1-P | Field mustard | nucleus | 43.63 | 52.9 |
| CDX78562 | Canola | nucleus | 43.63 | 52.9 |
| CDX70544 | Canola | nucleus | 43.95 | 52.87 |
| AT5G14140.1 | Thale cress | nucleus | 42.68 | 50.76 |
| KRG94534 | Soybean | nucleus | 10.83 | 40.96 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G109000.1 | EnsemblPlantsGene:TraesCS3B01G109000 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR21354 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:74889183..74891751
Molecular Weight (calculated)
36046.1 Da
IEP (calculated)
7.234
GRAVY (calculated)
-0.978
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQNPAEAME VSAPSEAGAP KDMGPWLGFW EVSRRRLTPD DPFFAAGDME RELLAKHVAL DLSDDDRYQL EKMDVASVSM VCCPIAGCGA HLDCLEDFED
101: HYSTRHTASC SVCSRVYPTS RLLSIHISEA HDSFFQAKVA RGFPMYECLV EGCGEKLKTY KSRQQHLVDK HQFPNSFEFF KRAQPSQRHR QKYHRRQTAY
201: KGEETRDTVM DVDGKNPRQS KSKYRPKQRD HKEPKENEHC HKESKENEHH EKEAKESDME VEQKIDELSS AVSRLSTADS VPSSVTFGHR RSRGLTFVPR
301: SIRQNKQVSQ PEAN
101: HYSTRHTASC SVCSRVYPTS RLLSIHISEA HDSFFQAKVA RGFPMYECLV EGCGEKLKTY KSRQQHLVDK HQFPNSFEFF KRAQPSQRHR QKYHRRQTAY
201: KGEETRDTVM DVDGKNPRQS KSKYRPKQRD HKEPKENEHC HKESKENEHH EKEAKESDME VEQKIDELSS AVSRLSTADS VPSSVTFGHR RSRGLTFVPR
301: SIRQNKQVSQ PEAN
001: MATGMAVDTV GELGFPYWNP IRRRFPPDSP FFASGNVERE LLAKQVTLDF TEDEINHLHK FVEIETRRIS CPIVGCPERL KSLDHFEDHY NARHTASCSV
101: CSRVYPTSRL LSIHISEAHD SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK LQRQHVSKLK HEEDKEAASS
201: DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG LTFVPRSVHR EKRTESSSAP GPTN
101: CSRVYPTSRL LSIHISEAHD SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK LQRQHVSKLK HEEDKEAASS
201: DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG LTFVPRSVHR EKRTESSSAP GPTN
Arabidopsis Description
Nucleic acid binding / zinc ion binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WRF4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.