Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70544 | Canola | nucleus | 88.26 | 89.27 |
| CDX78562 | Canola | nucleus | 87.5 | 89.19 |
| Bra006240.1-P | Field mustard | nucleus | 87.12 | 88.8 |
| VIT_14s0068g01930.t01 | Wine grape | nucleus | 64.02 | 66.8 |
| KRH06937 | Soybean | cytosol | 59.85 | 62.2 |
| Solyc02g094170.2.1 | Tomato | cytosol | 55.3 | 57.48 |
| PGSC0003DMT400052062 | Potato | cytosol | 54.92 | 57.09 |
| GSMUA_Achr6P16600_001 | Banana | cytosol | 55.68 | 52.13 |
| KRG94534 | Soybean | nucleus | 14.77 | 46.99 |
| Zm00001d007339_P001 | Maize | nucleus | 50.76 | 44.67 |
| Os11t0498400-01 | Rice | cytosol | 51.14 | 44.12 |
| TraesCS3B01G109000.1 | Wheat | nucleus | 50.76 | 42.68 |
| TraesCS3A01G093300.1 | Wheat | nucleus | 50.38 | 42.22 |
| TraesCS3D01G093600.1 | Wheat | nucleus | 50.0 | 41.9 |
| OQU83468 | Sorghum | plastid | 51.14 | 34.44 |
Protein Annotations
| MapMan:35.2 | EntrezGene:831264 | UniProt:A0A178UDE4 | EMBL:AB493748 | ProteinID:AED91992.1 | EMBL:AK228356 |
| ArrayExpress:AT5G14140 | EnsemblPlantsGene:AT5G14140 | RefSeq:AT5G14140 | TAIR:AT5G14140 | RefSeq:AT5G14140-TAIR-G | EnsemblPlants:AT5G14140.1 |
| TAIR:AT5G14140.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008150 | InterPro:IPR013087 |
| RefSeq:NP_196918.2 | ProteinID:OAO91217.1 | PFAM:PF00096 | PO:PO:0000293 | ScanProsite:PS00028 | PANTHER:PTHR21354 |
| UniProt:Q0WRF4 | SMART:SM00355 | UniParc:UPI0000DB5268 | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
Nucleic acid binding / zinc ion binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WRF4]
Coordinates
chr5:+:4561449..4563893
Molecular Weight (calculated)
30104.6 Da
IEP (calculated)
9.005
GRAVY (calculated)
-0.668
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MATGMAVDTV GELGFPYWNP IRRRFPPDSP FFASGNVERE LLAKQVTLDF TEDEINHLHK FVEIETRRIS CPIVGCPERL KSLDHFEDHY NARHTASCSV
101: CSRVYPTSRL LSIHISEAHD SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK LQRQHVSKLK HEEDKEAASS
201: DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG LTFVPRSVHR EKRTESSSAP GPTN
101: CSRVYPTSRL LSIHISEAHD SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK LQRQHVSKLK HEEDKEAASS
201: DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG LTFVPRSVHR EKRTESSSAP GPTN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.