Factsheet for Os06t0492700-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, golgi, plasma membrane, vacuole, endoplasmic reticulum, plastid

Predictor Summary:

extracellular 5
golgi 5
plasma membrane 5
endoplasmic reticulum 5
vacuole 5
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, secretory
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0435300-00
Os07t0587500-01
Os11t0498400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15930.1	Os03t0435300-00	AT3G01400.1	21798944
AT4G15930.1	Os07t0587500-01	AT3G01400.1	21798944
AT4G15930.1	Os11t0498400-01	AT5G14140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0256400-01	Rice	cytosol, nucleus	48.55	51.54
TraesCS3D01G180700.1	Wheat	cytosol	47.83	46.81
Bra012751.1-P	Field mustard	cytosol	26.09	46.75
GSMUA_Achr11P...	Banana	cytosol	26.09	46.75
TraesCS3B01G205000.1	Wheat	cytosol	47.1	46.1
TraesCS3A01G175300.1	Wheat	cytosol	47.1	46.1
OQU83188	Sorghum	plastid	42.03	46.03
GSMUA_Achr8P30040_001	Banana	cytosol	25.36	45.45
Solyc01g066590.2.1	Tomato	cytosol, extracellular	34.06	39.5
PGSC0003DMT400029467	Potato	extracellular	34.06	39.5
KRH37076	Soybean	cytosol	33.33	38.98
VIT_05s0077g02110.t01	Wine grape	cytosol	32.61	38.46
GSMUA_AchrUn_...	Banana	cytosol	24.64	38.2
CDY09728	Canola	cytosol	33.33	38.02
KRH12076	Soybean	cytosol	33.33	37.7
CDX90554	Canola	cytosol	32.61	37.19
CDY24919	Canola	cytosol	33.33	37.1
Bra038059.1-P	Field mustard	cytosol	33.33	37.1
CDY57865	Canola	cytosol	32.61	36.89
AT4G15930.1	Thale cress	cytosol	32.61	36.59
KRH12077	Soybean	cytosol	32.61	32.37
KRH37077	Soybean	mitochondrion	34.06	29.94
Os02t0269200-01	Rice	cytosol	13.77	19.19
Os02t0733001-00	Rice	cytosol, mitochondrion, peroxisome	18.84	16.25
Os04t0462600-01	Rice	cytosol	17.39	12.63
Os02t0580400-01	Rice	cytosol	18.12	12.56
Os01t0555600-00	Rice	cytosol	18.84	12.21
KRH40946	Soybean	plastid	2.17	2.59

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	EntrezGene:9267530	UniProt:A0A0P0WWS5	ProteinID:BAS97866.1	InterPro:DLC_sf
InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005868
GO:GO:0005874	GO:GO:0006810	GO:GO:0007017	GO:GO:0008092	GO:GO:0008150	GO:GO:0008574
GO:GO:0009987	GO:GO:0010970	GO:GO:0016043	GO:GO:0016787	GO:GO:0030286	GO:GO:0045505
GO:GO:0051959	GO:GO:0060271	GO:GO:2000582	InterPro:IPR037177	EnsemblPlantsGene:Os06g0492700	EnsemblPlants:Os06t0492700-00
PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF35	SMART:SM01375	SUPFAM:SSF54648	SignalP:SignalP-noTM
UniParc:UPI0001C7C8C9	RefSeq:XP_015642127.1	SEG:seg	:	:	:

Description

Similar to Dynein light chain LC6, flagellar outer arm. (Os06t0492700-00)

Coordinates

chr6:+:17035099..17036590

Molecular Weight (calculated)

15157.4 Da

IEP (calculated)

9.354

GRAVY (calculated)

-0.373

Length

138 amino acids

Sequence
(BLAST)

001: MGTAEMAPSS LLALLVVRVR VATASAGAVT VGGWRGPPPT ATASRPPRAP RLLAPPPPLA GHKIQIKSAN MKEEMRQEAF DIDRVAFEKH TMEKDIVEYI
101: KEFDKNHGPT WHCIVGHNFG CRAMDIRPPG PGEQRDWL

Best Arabidopsis Sequence Match ( AT4G15930.2 )
(BLAST)

1: MSDGRRKKSV NGGAPAQTIL DDRRSSLPEV EASPPAGKRA VIKSADMKDD MQKEAIEIAI SAFEKYSVEK DIAENIKKEF DKKHGATWHC IVGRNFG

Arabidopsis Description

At4g15930 [Source:UniProtKB/TrEMBL;Acc:Q84VW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.