Factsheet for PGSC0003DMT400029467

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400027542
PGSC0003DMT400030161
PGSC0003DMT400052062

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15930.1	PGSC0003DMT400027542	AT3G01400.1	21798944
AT4G15930.1	PGSC0003DMT400030161	AT3G01400.1	21798944
AT4G15930.1	PGSC0003DMT400052062	AT5G14140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g066590.2.1	Tomato	cytosol, extracellular	98.32	98.32
Bra012751.1-P	Field mustard	cytosol	52.94	81.82
GSMUA_Achr11P...	Banana	cytosol	51.26	79.22
GSMUA_Achr8P30040_001	Banana	cytosol	50.42	77.92
KRH12076	Soybean	cytosol	77.31	75.41
KRH37076	Soybean	cytosol	73.95	74.58
VIT_05s0077g02110.t01	Wine grape	cytosol	69.75	70.94
CDY57865	Canola	cytosol	66.39	64.75
Bra038059.1-P	Field mustard	cytosol	67.23	64.52
CDY24919	Canola	cytosol	67.23	64.52
CDY09728	Canola	cytosol	65.55	64.46
AT4G15930.1	Thale cress	cytosol	65.55	63.41
KRH12077	Soybean	cytosol	73.95	63.31
CDX90554	Canola	cytosol	63.87	62.81
Zm00001d008330_P001	Maize	mitochondrion	61.34	59.84
Os01t0256400-01	Rice	cytosol, nucleus	64.71	59.23
KRH37077	Soybean	mitochondrion	77.31	58.6
Zm00001d040291_P001	Maize	cytosol, mitochondrion	63.03	58.59
EES00507	Sorghum	cytosol	63.03	57.69
TraesCS3D01G180700.1	Wheat	cytosol	67.23	56.74
TraesCS3B01G205000.1	Wheat	cytosol	67.23	56.74
TraesCS3A01G175300.1	Wheat	cytosol	67.23	56.74
GSMUA_AchrUn_...	Banana	cytosol	31.09	41.57
OQU83188	Sorghum	plastid	42.02	39.68
PGSC0003DMT400019607	Potato	cytosol	29.41	37.23
PGSC0003DMT400006527	Potato	cytosol	28.57	36.17
Os06t0492700-00	Rice	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	39.5	34.06
PGSC0003DMT400049549	Potato	cytosol	31.93	31.41
PGSC0003DMT400081918	Potato	cytosol	31.09	28.46
PGSC0003DMT400032411	Potato	cytosol, mitochondrion, nucleus, plastid	33.61	27.21
PGSC0003DMT400053284	Potato	cytosol	33.61	17.32
PGSC0003DMT400062841	Potato	plastid	35.29	15.38
PGSC0003DMT400083122	Potato	cytosol	34.45	15.02

Protein Annotations

EntrezGene:102587230	Gene3D:3.30.740.10	MapMan:35.1	InterPro:DLC_sf	InterPro:Dynein_light_1/2_CS	InterPro:Dynein_light_chain_typ-1/2
GO:GO:0003674	GO:GO:0003774	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0005875	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016787	GO:GO:0030286	InterPro:IPR037177	UniProt:M1ASV4	PFAM:PF01221
EnsemblPlantsGene:PGSC0003DMG400011331	PGSC:PGSC0003DMG400011331	EnsemblPlants:PGSC0003DMT400029467	ScanProsite:PS01239	PANTHER:PTHR11886	SMART:SM01375
SUPFAM:SSF54648	UniParc:UPI000295E395	RefSeq:XP_006342815.1	:	:	:

Description

Dynein light chain [Source:PGSC_GENE;Acc:PGSC0003DMG400011331]

Coordinates

chr1:-:57547424..57551463

Molecular Weight (calculated)

13065.4 Da

IEP (calculated)

9.004

GRAVY (calculated)

-0.507

Length

119 amino acids

Sequence
(BLAST)

001: MSEDAKRSGG APAAKPTSDD RRISSGSVPS PTGTKVTIKS ADMKPDVQKE AVDIAIAAFE KHNVEKDVAE LIKKEFDKKY GPTWHCIVGK NFGSYVTHET
101: NHFVYFYLDS KAVLLFKSG

Best Arabidopsis Sequence Match ( AT4G15930.1 )
(BLAST)

001: MSDGRRKKSV NGGAPAQTIL DDRRSSLPEV EASPPAGKRA VIKSADMKDD MQKEAIEIAI SAFEKYSVEK DIAENIKKEF DKKHGATWHC IVGRNFGSYV
101: THETNHFVYF YLDQKAVLLF KSG

Arabidopsis Description

At4g15930 [Source:UniProtKB/TrEMBL;Acc:Q84VW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.