Factsheet for PGSC0003DMT400081918

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005460.2.1	Tomato	cytosol	93.85	93.85
VIT_01s0011g05480.t01	Wine grape	cytosol	79.23	81.1
KRH60372	Soybean	cytosol	76.92	75.19
KRH41675	Soybean	cytosol	76.15	74.44
CDY41457	Canola	cytosol	73.08	73.08
CDX91705	Canola	cytosol	72.31	72.31
KRH08469	Soybean	cytosol	72.31	72.31
KRH70126	Soybean	cytosol	73.85	72.18
Bra012367.1-P	Field mustard	cytosol	71.54	71.54
CDY04736	Canola	cytosol	71.54	71.54
AT1G23220.1	Thale cress	cytosol	70.77	71.32
CDY21425	Canola	cytosol	70.77	70.77
Bra024572.1-P	Field mustard	cytosol	70.77	70.77
CDY25775	Canola	cytosol	71.54	67.88
CDY12479	Canola	cytosol	71.54	67.88
GSMUA_Achr1P20660_001	Banana	cytosol	63.85	61.03
GSMUA_Achr7P12500_001	Banana	cytosol	66.92	60.0
GSMUA_Achr9P27210_001	Banana	nucleus	64.62	55.26
TraesCS6D01G275800.1	Wheat	cytosol	55.38	50.7
TraesCS6B01G325300.1	Wheat	cytosol	56.92	50.0
TraesCS6A01G295200.1	Wheat	cytosol	56.15	49.32
Zm00001d051789_P002	Maize	cytosol	57.69	48.39
Zm00001d017947_P001	Maize	cytosol, mitochondrion	56.15	47.4
TraesCS2D01G325700.1	Wheat	cytosol	62.31	47.09
Os02t0733001-00	Rice	cytosol, mitochondrion, peroxisome	57.69	46.88
EES05573	Sorghum	cytosol	56.92	46.84
TraesCS2A01G337200.1	Wheat	cytosol	62.31	46.29
TraesCS2B01G344700.1	Wheat	cytosol	62.31	46.29
Zm00001d003400_P001	Maize	cytosol	60.77	43.89
Zm00001d050905_P001	Maize	cytosol	63.85	42.78
Os02t0580400-01	Rice	cytosol	64.62	42.21
Os04t0462600-01	Rice	cytosol	61.54	42.11
EES07042	Sorghum	cytosol, mitochondrion	63.85	41.09
TraesCS6B01G224400.1	Wheat	cytosol	65.38	41.06
TraesCS6D01G189000.1	Wheat	cytosol	64.62	40.38
PGSC0003DMT400032411	Potato	cytosol, mitochondrion, nucleus, plastid	41.54	36.73
PGSC0003DMT400006527	Potato	cytosol	25.38	35.11
PGSC0003DMT400019607	Potato	cytosol	25.38	35.11
Zm00001d016977_P002	Maize	cytosol	64.62	31.7
PGSC0003DMT400049549	Potato	cytosol	29.23	31.41
PGSC0003DMT400029467	Potato	extracellular	28.46	31.09
PGSC0003DMT400053284	Potato	cytosol	44.62	25.11
PGSC0003DMT400083122	Potato	cytosol	49.23	23.44
EES10953	Sorghum	plastid	58.46	23.24
PGSC0003DMT400062841	Potato	plastid	43.85	20.88

Protein Annotations

EntrezGene:102587184	Gene3D:3.30.740.10	MapMan:35.2	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674
GO:GO:0003774	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787
GO:GO:0030286	InterPro:IPR037177	UniProt:M1D5A4	PFAM:PF01221	EnsemblPlantsGene:PGSC0003DMG400032159	PGSC:PGSC0003DMG400032159
EnsemblPlants:PGSC0003DMT400081918	PANTHER:PTHR11886	PANTHER:PTHR11886:SF39	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI0002963CE9
RefSeq:XP_006354109.1	:	:	:	:	:

Description

Dynein light chain type 1 family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400032159]

Coordinates

chr1:-:1021496..1024380

Molecular Weight (calculated)

14790.8 Da

IEP (calculated)

8.835

GRAVY (calculated)

-0.308

Length

130 amino acids

Sequence
(BLAST)

001: MEKAEEELER RSKFLNSLIL KKKSVEEKQQ NGDLNVRVRA SDMPFSLQNH AFKCARDNLD ATMACGKLDS KRLALVLKKE FDSTYGPAWH CIVGTSFGSY
101: VTHSIGGFLY FSIDKVYVLL FRTAVEPLNH

Best Arabidopsis Sequence Match ( AT1G23220.1 )
(BLAST)

001: MEGVELELER RSKFLNSLIQ KKKAKEQQDQ KDEFNVRVRA SDMPLPQQNR AFSLSREILN ATPGKADNKR LAHALKKDFD SAYGPAWHCI VGTSFGSYVT
101: HSTGGFLYFQ IDKVYVLLFK TAVEPLDQK

Arabidopsis Description

Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q9LR39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.