Factsheet for Zm00001d003400_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G325700.1	Wheat	cytosol	67.78	70.93
TraesCS2A01G337200.1	Wheat	cytosol	68.89	70.86
TraesCS2B01G344700.1	Wheat	cytosol	67.78	69.71
Os04t0462600-01	Rice	cytosol	72.22	68.42
VIT_01s0011g05480.t01	Wine grape	cytosol	46.11	65.35
Zm00001d050905_P001	Maize	cytosol	69.44	64.43
KRH70126	Soybean	cytosol	45.56	61.65
KRH41675	Soybean	cytosol	45.56	61.65
KRH60372	Soybean	cytosol	45.56	61.65
Solyc01g005460.2.1	Tomato	cytosol	43.89	60.77
PGSC0003DMT400081918	Potato	cytosol	43.89	60.77
KRH08469	Soybean	cytosol	43.89	60.77
GSMUA_Achr7P12500_001	Banana	cytosol	48.33	60.0
AT1G23220.1	Thale cress	cytosol	42.78	59.69
GSMUA_Achr9P27210_001	Banana	nucleus	49.44	58.55
Bra012367.1-P	Field mustard	cytosol	42.22	58.46
CDX91705	Canola	cytosol	42.22	58.46
CDY41457	Canola	cytosol	41.67	57.69
GSMUA_Achr1P20660_001	Banana	cytosol	43.33	57.35
CDY21425	Canola	cytosol	41.11	56.92
CDY04736	Canola	cytosol	41.11	56.92
Bra024572.1-P	Field mustard	cytosol	41.11	56.92
CDY25775	Canola	cytosol	42.22	55.47
CDY12479	Canola	cytosol	42.22	55.47
Zm00001d017947_P001	Maize	cytosol, mitochondrion	45.0	52.6
Zm00001d051789_P002	Maize	cytosol	44.44	51.61
Zm00001d016977_P002	Maize	cytosol	67.78	46.04
EES10953	Sorghum	plastid	79.44	43.73
Zm00001d043386_P001	Maize	cytosol	20.0	38.71
Zm00001d008330_P001	Maize	mitochondrion	23.89	35.25
Zm00001d040291_P001	Maize	cytosol, mitochondrion	23.89	33.59
Zm00001d009402_P001	Maize	cytosol, mitochondrion	31.67	31.67
Zm00001d016016_P001	Maize	cytosol	20.0	30.0

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	UniProt:A0A1D6E929	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674
GO:GO:0003774	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787
GO:GO:0030286	InterPro:IPR037177	ProteinID:ONM16899.1	PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF61
SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI000220F9B2	EnsemblPlantsGene:Zm00001d003400	EnsemblPlants:Zm00001d003400_P001	EnsemblPlants:Zm00001d003400_T001
SEG:seg	:	:	:	:	:

Description

Microtubule motor

Coordinates

chr2:+:43084830..43087036

Molecular Weight (calculated)

19726.9 Da

IEP (calculated)

9.436

GRAVY (calculated)

-0.369

Length

180 amino acids

Sequence
(BLAST)

001: MDPACEELER RSRYLSALVR RTKFADPPQP EPEAKADVEP PQLKAPPHVG GEGKGGKDEA KAEERTPMKK PRGEAAAAEA EGRKVAVCVR AADMPLPLQR
101: RAVRIALEAV AAMPRLESKR LALALKKDFD TTYGPAWHCI VGTSFGSYVT HSLGGFLYFS VDKAYVLLFR TAVQPLVQLQ

Best Arabidopsis Sequence Match ( AT1G23220.1 )
(BLAST)

001: MEGVELELER RSKFLNSLIQ KKKAKEQQDQ KDEFNVRVRA SDMPLPQQNR AFSLSREILN ATPGKADNKR LAHALKKDFD SAYGPAWHCI VGTSFGSYVT
101: HSTGGFLYFQ IDKVYVLLFK TAVEPLDQK

Arabidopsis Description

Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q9LR39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.