Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0269200-01 | Rice | cytosol | 75.0 | 90.91 |
| EES06648 | Sorghum | cytosol | 71.67 | 86.87 |
| TraesCS4A01G427300.1 | Wheat | cytosol | 73.33 | 83.81 |
| TraesCS7A01G061500.1 | Wheat | cytosol | 71.67 | 81.9 |
| TraesCS7D01G056400.1 | Wheat | cytosol | 71.67 | 81.9 |
| Zm00001d043386_P001 | Maize | cytosol | 55.0 | 70.97 |
| TraesCS4A01G428300.1 | Wheat | cytosol | 79.17 | 70.9 |
| AT1G52245.1 | Thale cress | cytosol | 55.0 | 70.21 |
| CDY02551 | Canola | cytosol | 55.0 | 70.21 |
| Bra014318.1-P | Field mustard | cytosol | 55.0 | 70.21 |
| Bra018957.1-P | Field mustard | cytosol | 54.17 | 69.15 |
| CDY30135 | Canola | cytosol | 53.33 | 68.82 |
| GSMUA_Achr7P25190_001 | Banana | cytosol | 53.33 | 68.82 |
| CDX97722 | Canola | cytosol | 53.33 | 68.82 |
| Bra027190.1-P | Field mustard | cytosol | 53.33 | 68.82 |
| Solyc12g044240.1.1 | Tomato | cytosol | 53.33 | 68.09 |
| PGSC0003DMT400019607 | Potato | cytosol | 52.5 | 67.02 |
| AT3G16120.1 | Thale cress | cytosol | 51.67 | 66.67 |
| KRH60274 | Soybean | cytosol | 50.0 | 64.52 |
| KRH09878 | Soybean | cytosol | 50.83 | 64.21 |
| Solyc03g120690.2.1 | Tomato | cytosol | 50.0 | 63.83 |
| KRH41561 | Soybean | cytosol | 49.17 | 63.44 |
| KRH23441 | Soybean | cytosol | 50.0 | 63.16 |
| VIT_09s0002g04280.t01 | Wine grape | cytosol | 50.0 | 63.16 |
| PGSC0003DMT400006527 | Potato | cytosol | 49.17 | 62.77 |
| VIT_11s0016g03770.t01 | Wine grape | cytosol | 49.17 | 61.46 |
| HORVU7Hr1G011400.2 | Barley | plastid | 74.17 | 54.94 |
| CDY47528 | Canola | cytosol | 50.0 | 46.15 |
| Zm00001d008330_P001 | Maize | mitochondrion | 29.17 | 28.69 |
| Zm00001d040291_P001 | Maize | cytosol, mitochondrion | 28.33 | 26.56 |
| Zm00001d017947_P001 | Maize | cytosol, mitochondrion | 30.0 | 23.38 |
| Zm00001d051789_P002 | Maize | cytosol | 30.0 | 23.23 |
| Zm00001d009402_P001 | Maize | cytosol, mitochondrion | 34.17 | 22.78 |
| Zm00001d003400_P001 | Maize | cytosol | 30.0 | 20.0 |
| Zm00001d050905_P001 | Maize | cytosol | 30.83 | 19.07 |
| Zm00001d016977_P002 | Maize | cytosol | 30.83 | 13.96 |
Protein Annotations
| Gene3D:3.30.740.10 | MapMan:35.2 | UniProt:A0A1D6H542 | ProteinID:AQK69941.1 | InterPro:DLC_sf | InterPro:Dynein_light_chain_typ-1/2 |
| GO:GO:0003674 | GO:GO:0003774 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0030286 | InterPro:IPR037177 | PFAM:PF01221 |
| PANTHER:PTHR11886 | PANTHER:PTHR11886:SF48 | SMART:SM01375 | SUPFAM:SSF54648 | TMHMM:TMhelix | UniParc:UPI0008434FAC |
| EnsemblPlantsGene:Zm00001d016016 | EnsemblPlants:Zm00001d016016_P001 | EnsemblPlants:Zm00001d016016_T001 | SEG:seg | : | : |
Description
Dynein light chain LC6%2C flagellar outer arm
Coordinates
chr5:+:139737481..139737957
Molecular Weight (calculated)
12957.6 Da
IEP (calculated)
8.667
GRAVY (calculated)
0.261
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEGRARVED TDMPARMQDA ATSAASRALD LFDVADCRAI AGHIKTARSL SSPLLSLLCR RPREFDKRYG VGWQCVVGAN FGCFFTHSSG TFIYFSMERL
101: SFLLFKAAVV AAAAAAAVAS
101: SFLLFKAAVV AAAAAAAVAS
1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP
Arabidopsis Description
At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.