Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88891 | Sorghum | nucleus | 58.24 | 48.18 |
| Zm00001d036499_P001 | Maize | nucleus | 57.14 | 47.93 |
| TraesCS7D01G416800.1 | Wheat | nucleus | 46.15 | 37.5 |
| Os06t0698748-02 | Rice | nucleus | 46.7 | 37.28 |
| TraesCS7B01G325100.1 | Wheat | nucleus | 46.15 | 37.17 |
| TraesCS7A01G424800.1 | Wheat | nucleus | 45.6 | 36.56 |
| CDY68667 | Canola | cytosol | 26.37 | 32.0 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 35.16 | 28.96 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 34.62 | 27.04 |
| PGSC0003DMT400086234 | Potato | nucleus | 24.73 | 25.57 |
| Zm00001d049768_P001 | Maize | nucleus | 36.26 | 25.38 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 30.77 | 24.89 |
| Zm00001d021006_P001 | Maize | nucleus | 34.62 | 24.42 |
| Solyc08g068970.2.1 | Tomato | nucleus | 23.08 | 23.73 |
| Zm00001d006059_P001 | Maize | nucleus | 34.07 | 23.66 |
| Bra020475.1-P | Field mustard | nucleus | 28.02 | 23.61 |
| CDY05394 | Canola | nucleus | 28.02 | 23.29 |
| CDY05462 | Canola | nucleus | 27.47 | 23.26 |
| Zm00001d031545_P001 | Maize | nucleus | 34.62 | 23.16 |
| AT4G31510.1 | Thale cress | nucleus | 26.37 | 22.43 |
| Bra036527.1-P | Field mustard | nucleus | 28.02 | 22.27 |
| KRH52604 | Soybean | nucleus | 30.77 | 22.22 |
| CDX87106 | Canola | nucleus | 28.02 | 22.17 |
| KRH61944 | Soybean | nucleus | 30.22 | 21.65 |
| CDY19822 | Canola | nucleus | 27.47 | 21.64 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 20.33 | 21.51 |
| Bra031516.1-P | Field mustard | nucleus | 24.18 | 21.46 |
| CDY23302 | Canola | nucleus | 25.27 | 20.91 |
| Bra010233.1-P | Field mustard | nucleus | 25.27 | 20.91 |
| Bra007841.1-P | Field mustard | nucleus | 28.02 | 20.9 |
| CDX76805 | Canola | nucleus | 28.02 | 20.9 |
| AT2G24550.1 | Thale cress | nucleus | 28.02 | 20.82 |
| CDY45582 | Canola | nucleus | 28.57 | 20.63 |
| Bra024004.1-P | Field mustard | nucleus | 24.18 | 20.47 |
| Bra032085.1-P | Field mustard | nucleus | 28.57 | 20.16 |
| CDY13436 | Canola | nucleus | 23.63 | 20.09 |
| AT5G24890.1 | Thale cress | nucleus | 26.37 | 20.0 |
| CDY20324 | Canola | nucleus | 28.02 | 19.77 |
| CDY55465 | Canola | nucleus | 25.27 | 19.66 |
| CDX72307 | Canola | nucleus | 23.08 | 19.63 |
| CDY36435 | Canola | nucleus | 23.63 | 19.55 |
| CDX88142 | Canola | nucleus | 24.18 | 19.38 |
| Bra009802.1-P | Field mustard | nucleus | 24.18 | 19.38 |
| KRH04949 | Soybean | extracellular, vacuole | 26.92 | 15.26 |
Protein Annotations
| EMBL:BT087649 | EnsemblPlants:Zm00001d014648_P001 | EnsemblPlants:Zm00001d014648_T001 | EnsemblPlantsGene:Zm00001d014648 | EntrezGene:100502287 | PANTHER:PTHR33172 |
| PANTHER:PTHR33172:SF3 | ProteinID:AQK66717.1 | SEG:seg | UniParc:UPI0001A4BD24 | UniProt:C4JA02 | MapMan:35.2 |
Description
oligopeptide transporter-like protein
Coordinates
chr5:+:57181933..57184177
Molecular Weight (calculated)
18860.8 Da
IEP (calculated)
5.088
GRAVY (calculated)
-0.579
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVVAAVGPA AAASYGQPLC GGGARKRKDA GVVQDQDQDQ DAGSSLRGGK NAALFVLETV EEEADADTER SSIGAASEDG DDEEEEEVAS GGTKGAGAAL
101: ACMDMGALDD ALPIKRGLSN FFSGKSRSFV ANLRDAASAG SSARGLAKPE NPFNKRRRVL RYCATRWRPA RPPRSPPPPP PT
101: ACMDMGALDD ALPIKRGLSN FFSGKSRSFV ANLRDAASAG SSARGLAKPE NPFNKRRRVL RYCATRWRPA RPPRSPPPPP PT
001: MEVMVGSSFG IGMAAYVRDH RGVSAQDKAV QTALFLADES GRGGSQIGIG LRMSNNNNKS PEESSDSSSS IGESSENEEE EEEDDAVSCQ RGTLDSFSSS
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE
Arabidopsis Description
At2g24550/F25P17.15 [Source:UniProtKB/TrEMBL;Acc:Q945P6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.