Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P05640_001 | Banana | nucleus | 56.11 | 53.22 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 46.61 | 45.78 |
| TraesCS5B01G277200.1 | Wheat | nucleus | 47.51 | 42.51 |
| TraesCS5A01G277500.1 | Wheat | nucleus | 47.51 | 41.83 |
| TraesCS5D01G284800.1 | Wheat | nucleus | 46.15 | 41.3 |
| Os08t0516900-01 | Rice | nucleus, plasma membrane | 47.06 | 39.85 |
| Zm00001d021006_P001 | Maize | nucleus | 45.7 | 39.15 |
| Os09t0499000-01 | Rice | nucleus | 45.25 | 38.61 |
| EER99130 | Sorghum | nucleus | 44.8 | 38.52 |
| TraesCS7D01G253100.1 | Wheat | mitochondrion, nucleus | 45.7 | 36.73 |
| TraesCS7B01G150700.1 | Wheat | mitochondrion, nucleus | 45.7 | 36.46 |
| Zm00001d006059_P001 | Maize | nucleus | 42.99 | 36.26 |
| HORVU7Hr1G052580.1 | Barley | nucleus | 44.34 | 35.77 |
| Zm00001d014648_P001 | Maize | nucleus | 28.96 | 35.16 |
| TraesCS7A01G254500.1 | Wheat | mitochondrion, nucleus | 43.89 | 35.14 |
| Zm00001d031545_P001 | Maize | nucleus | 41.63 | 33.82 |
| Zm00001d049768_P001 | Maize | nucleus | 39.37 | 33.46 |
| KXG25581 | Sorghum | nucleus | 42.08 | 33.45 |
| TraesCS7D01G416800.1 | Wheat | nucleus | 33.48 | 33.04 |
| TraesCS7B01G325100.1 | Wheat | nucleus | 33.48 | 32.74 |
| Zm00001d036499_P001 | Maize | nucleus | 31.67 | 32.26 |
| CDY68667 | Canola | cytosol | 21.72 | 32.0 |
| EER88891 | Sorghum | nucleus | 31.67 | 31.82 |
| TraesCS7A01G424800.1 | Wheat | nucleus | 32.58 | 31.72 |
| Os06t0698748-02 | Rice | nucleus | 32.58 | 31.58 |
| PGSC0003DMT400086234 | Potato | nucleus | 24.89 | 31.25 |
| Solyc08g068970.2.1 | Tomato | nucleus | 24.89 | 31.07 |
| HORVU5Hr1G075200.2 | Barley | golgi, plastid | 44.8 | 30.09 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 22.62 | 29.07 |
| CDX72307 | Canola | nucleus | 26.7 | 27.57 |
| Bra031516.1-P | Field mustard | nucleus | 25.34 | 27.32 |
| CDY05462 | Canola | nucleus | 26.24 | 26.98 |
| Bra009802.1-P | Field mustard | nucleus | 27.6 | 26.87 |
| CDX88142 | Canola | nucleus | 27.6 | 26.87 |
| Bra020475.1-P | Field mustard | nucleus | 26.24 | 26.85 |
| AT4G31510.1 | Thale cress | nucleus | 25.79 | 26.64 |
| Bra024004.1-P | Field mustard | nucleus | 25.79 | 26.51 |
| CDY05394 | Canola | nucleus | 26.24 | 26.48 |
| CDY23302 | Canola | nucleus | 26.24 | 26.36 |
| Bra010233.1-P | Field mustard | nucleus | 26.24 | 26.36 |
| CDY55465 | Canola | nucleus | 27.6 | 26.07 |
| KRH61944 | Soybean | nucleus | 29.86 | 25.98 |
| AT5G24890.1 | Thale cress | nucleus | 28.05 | 25.83 |
| Bra036527.1-P | Field mustard | nucleus | 26.7 | 25.76 |
| CDY13436 | Canola | nucleus | 24.89 | 25.7 |
| CDX87106 | Canola | nucleus | 26.7 | 25.65 |
| CDY19822 | Canola | nucleus | 26.7 | 25.54 |
| CDY36435 | Canola | nucleus | 25.34 | 25.45 |
| Bra007841.1-P | Field mustard | nucleus | 28.05 | 25.41 |
| KRH52604 | Soybean | nucleus | 28.96 | 25.4 |
| CDX76805 | Canola | nucleus | 27.6 | 25.0 |
| AT2G24550.1 | Thale cress | nucleus | 27.15 | 24.49 |
| CDY45582 | Canola | nucleus | 27.6 | 24.21 |
| Bra032085.1-P | Field mustard | nucleus | 28.05 | 24.03 |
| CDY20324 | Canola | nucleus | 27.6 | 23.64 |
| KRH04949 | Soybean | extracellular, vacuole | 25.79 | 17.76 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P15940_001 | EnsemblPlants:GSMUA_Achr7T15940_001 | EnsemblPlantsGene:GSMUA_Achr7G15940_001 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF15 | SEG:seg |
| UniParc:UPI000294967E | UniProt:M0THY1 | MapMan:35.2 | : | : | : |
Description
Putative MTD1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G15940_001]
Coordinates
chr7:+:12840329..12841200
Molecular Weight (calculated)
23627.2 Da
IEP (calculated)
4.583
GRAVY (calculated)
-0.588
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLVISSVG LKDHVSLPAY LHAEKKEEKE QTLVEVVRKR TLFCLEEEEE EEKEDSSESS SIGAASSSSS DKEGEGVGEG EEVESKKGEG AFGSLDTLEE
101: SLPIKGGLSN FFSGKSKSFA SLSDAAANAN ANELAKPENP LNKRRRILMA YKARRASYGS LISASTYLPS LPSSDHTVPE GDEEEGERCG GDLLSVPPLP
201: SHGNAFGSSP RCFSLSDLRH V
101: SLPIKGGLSN FFSGKSKSFA SLSDAAANAN ANELAKPENP LNKRRRILMA YKARRASYGS LISASTYLPS LPSSDHTVPE GDEEEGERCG GDLLSVPPLP
201: SHGNAFGSSP RCFSLSDLRH V
001: MEVMVGSSFG IGMAAYVRDH RGVSAQDKAV QTALFLADES GRGGSQIGIG LRMSNNNNKS PEESSDSSSS IGESSENEEE EEEDDAVSCQ RGTLDSFSSS
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE
Arabidopsis Description
At2g24550/F25P17.15 [Source:UniProtKB/TrEMBL;Acc:Q945P6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.