Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88142 | Canola | nucleus | 86.75 | 89.43 |
| CDY05394 | Canola | nucleus | 68.8 | 73.52 |
| CDY19822 | Canola | nucleus | 72.22 | 73.16 |
| CDX87106 | Canola | nucleus | 71.37 | 72.61 |
| CDY05462 | Canola | nucleus | 61.54 | 66.98 |
| AT5G24890.1 | Thale cress | nucleus | 62.82 | 61.25 |
| CDX72307 | Canola | nucleus | 33.76 | 36.92 |
| CDY20324 | Canola | nucleus | 40.6 | 36.82 |
| CDY68667 | Canola | cytosol | 23.5 | 36.67 |
| CDY45582 | Canola | nucleus | 39.32 | 36.51 |
| CDY13436 | Canola | nucleus | 33.33 | 36.45 |
| CDX76805 | Canola | nucleus | 37.61 | 36.07 |
| KRH61944 | Soybean | nucleus | 38.03 | 35.04 |
| KRH52604 | Soybean | nucleus | 37.61 | 34.92 |
| CDY36435 | Canola | nucleus | 31.62 | 33.64 |
| CDY23302 | Canola | nucleus | 31.2 | 33.18 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 22.65 | 30.81 |
| PGSC0003DMT400086234 | Potato | nucleus | 22.65 | 30.11 |
| Solyc08g068970.2.1 | Tomato | nucleus | 21.79 | 28.81 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 26.92 | 28.0 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 26.07 | 27.6 |
| KRH04949 | Soybean | extracellular, vacuole | 37.18 | 27.1 |
| Os08t0516900-01 | Rice | nucleus, plasma membrane | 29.49 | 26.44 |
| Zm00001d049768_P001 | Maize | nucleus | 29.06 | 26.15 |
| KXG25581 | Sorghum | nucleus | 30.77 | 25.9 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 25.64 | 25.75 |
| Zm00001d014648_P001 | Maize | nucleus | 19.66 | 25.27 |
| TraesCS5D01G284800.1 | Wheat | nucleus | 26.07 | 24.7 |
| TraesCS7B01G150700.1 | Wheat | mitochondrion, nucleus | 29.06 | 24.55 |
| HORVU7Hr1G052580.1 | Barley | nucleus | 28.63 | 24.45 |
| TraesCS7D01G253100.1 | Wheat | mitochondrion, nucleus | 28.63 | 24.36 |
| TraesCS7A01G254500.1 | Wheat | mitochondrion, nucleus | 28.63 | 24.28 |
| TraesCS5A01G277500.1 | Wheat | nucleus | 25.64 | 23.9 |
| Zm00001d031545_P001 | Maize | nucleus | 27.78 | 23.9 |
| TraesCS5B01G277200.1 | Wheat | nucleus | 25.21 | 23.89 |
| EER99130 | Sorghum | nucleus | 26.07 | 23.74 |
| Zm00001d021006_P001 | Maize | nucleus | 26.07 | 23.64 |
| EER88891 | Sorghum | nucleus | 22.22 | 23.64 |
| Zm00001d036499_P001 | Maize | nucleus | 21.37 | 23.04 |
| Os09t0499000-01 | Rice | nucleus | 24.79 | 22.39 |
| Zm00001d006059_P001 | Maize | nucleus | 24.79 | 22.14 |
| TraesCS7B01G325100.1 | Wheat | nucleus | 21.37 | 22.12 |
| TraesCS7D01G416800.1 | Wheat | nucleus | 20.94 | 21.88 |
| TraesCS7A01G424800.1 | Wheat | nucleus | 20.51 | 21.15 |
| Os06t0698748-02 | Rice | nucleus | 18.8 | 19.3 |
| HORVU5Hr1G075200.2 | Barley | golgi, plastid | 26.92 | 19.15 |
Protein Annotations
| EnsemblPlants:CDY55465 | EnsemblPlantsGene:GSBRNA2T00016910001 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF15 | ProteinID:CDY55465 | ProteinID:CDY55465.1 |
| SEG:seg | UniParc:UPI0004EAE4DA | UniProt:A0A078IYP5 | MapMan:35.2 | : | : |
Description
BnaCnng28890DBnaCnng28890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYP5]
Coordinates
chrLK033405:-:25755..27014
Molecular Weight (calculated)
25790.9 Da
IEP (calculated)
4.190
GRAVY (calculated)
-1.129
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMMSGGPSF SIEVSEYGND PPATEKASSS SFSSGDTVNE DEAGLSRLGS GIWSGRTADY SSESSSSIGS PGDREEDEES EEENDEELGL RGLSSMSSLE
101: DSLISKRGLS NHYKGKSKSF GNLAEIGSVK EVPKQENPLN KRRRLQICNK LARRSFYSWQ NPKSMPLFPV NEDHDEDEDN DEDLKSSDEE RGGARGVSFA
201: RKPSFKNRAL KSRSCFALSD LQEEDDDDDD DEGQ
101: DSLISKRGLS NHYKGKSKSF GNLAEIGSVK EVPKQENPLN KRRRLQICNK LARRSFYSWQ NPKSMPLFPV NEDHDEDEDN DEDLKSSDEE RGGARGVSFA
201: RKPSFKNRAL KSRSCFALSD LQEEDDDDDD DEGQ
001: MELMAKPTFS IEVSQYGTTD LPATEKASSS SSSFETTNEE GVEESGLSRI WSGQTADYSS DSSSIGTPGD SEEDEEESEN ENDDVSSKEL GLRGLASMSS
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
Arabidopsis Description
At5g24890 [Source:UniProtKB/TrEMBL;Acc:Q8L9W8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.