Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G284800.1 | Wheat | nucleus | 97.17 | 97.17 |
| TraesCS5A01G277500.1 | Wheat | nucleus | 97.17 | 95.62 |
| HORVU5Hr1G075200.2 | Barley | golgi, plastid | 86.64 | 65.05 |
| Zm00001d021006_P001 | Maize | nucleus | 67.61 | 64.73 |
| EER99130 | Sorghum | nucleus | 65.18 | 62.65 |
| Zm00001d006059_P001 | Maize | nucleus | 65.18 | 61.45 |
| Os09t0499000-01 | Rice | nucleus | 63.16 | 60.23 |
| TraesCS7B01G150700.1 | Wheat | mitochondrion, nucleus | 56.68 | 50.54 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 42.51 | 47.51 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 39.68 | 43.56 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 39.27 | 41.63 |
| TraesCS7B01G325100.1 | Wheat | nucleus | 32.79 | 35.84 |
| CDY68667 | Canola | cytosol | 20.24 | 33.33 |
| KRH61944 | Soybean | nucleus | 31.58 | 30.71 |
| KRH52604 | Soybean | nucleus | 31.17 | 30.56 |
| CDY19822 | Canola | nucleus | 28.34 | 30.3 |
| Bra036527.1-P | Field mustard | nucleus | 27.53 | 29.69 |
| Solyc08g068970.2.1 | Tomato | nucleus | 21.05 | 29.38 |
| CDX87106 | Canola | nucleus | 27.13 | 29.13 |
| CDY05462 | Canola | nucleus | 24.7 | 28.37 |
| Bra020475.1-P | Field mustard | nucleus | 24.7 | 28.24 |
| CDX72307 | Canola | nucleus | 24.29 | 28.04 |
| AT5G24890.1 | Thale cress | nucleus | 27.13 | 27.92 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 19.43 | 27.91 |
| Bra031516.1-P | Field mustard | nucleus | 23.08 | 27.8 |
| AT4G31510.1 | Thale cress | nucleus | 23.89 | 27.57 |
| AT2G24550.1 | Thale cress | nucleus | 27.13 | 27.35 |
| PGSC0003DMT400086234 | Potato | nucleus | 19.43 | 27.27 |
| Bra024004.1-P | Field mustard | nucleus | 23.08 | 26.51 |
| CDY05394 | Canola | nucleus | 23.48 | 26.48 |
| CDX88142 | Canola | nucleus | 24.29 | 26.43 |
| Bra009802.1-P | Field mustard | nucleus | 24.29 | 26.43 |
| CDY36435 | Canola | nucleus | 23.48 | 26.36 |
| CDY45582 | Canola | nucleus | 26.72 | 26.19 |
| CDY13436 | Canola | nucleus | 22.67 | 26.17 |
| Bra032085.1-P | Field mustard | nucleus | 27.13 | 25.97 |
| CDY23302 | Canola | nucleus | 23.08 | 25.91 |
| Bra010233.1-P | Field mustard | nucleus | 23.08 | 25.91 |
| Bra007841.1-P | Field mustard | nucleus | 25.1 | 25.41 |
| CDY55465 | Canola | nucleus | 23.89 | 25.21 |
| CDX76805 | Canola | nucleus | 24.7 | 25.0 |
| CDY20324 | Canola | nucleus | 25.51 | 24.42 |
| KRH04949 | Soybean | extracellular, vacuole | 27.94 | 21.5 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G277200.1 | EnsemblPlantsGene:TraesCS5B01G277200 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF4 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr5B:-:462882918..462883902
Molecular Weight (calculated)
26135.6 Da
IEP (calculated)
4.272
GRAVY (calculated)
-0.777
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTAVARPFG GFPGSGRAKG DELLGKKMSD GFFIEEEEEE EAEEVLTESS SIGAPSPSSS SIGEDSSSEV GGEGEDEEVE SKLKEEPGLG CLDALEDSLP
101: IKNGLSSFYA GKSKSFTSLA EAAARDAVKE LAKPENPFNK RRRILATWSR RASCSSLATA TYLPPLLAPD HALPEGDEGE EDDDSDSGSD EQHRGKNGWE
201: APALPPPRLS VNTQTGASAA RRGGSFRSPR SYSLSDLRNG GDASYNQ
101: IKNGLSSFYA GKSKSFTSLA EAAARDAVKE LAKPENPFNK RRRILATWSR RASCSSLATA TYLPPLLAPD HALPEGDEGE EDDDSDSGSD EQHRGKNGWE
201: APALPPPRLS VNTQTGASAA RRGGSFRSPR SYSLSDLRNG GDASYNQ
001: MEVMVGSSFG IGMAAYVRDH RGVSAQDKAV QTALFLADES GRGGSQIGIG LRMSNNNNKS PEESSDSSSS IGESSENEEE EEEDDAVSCQ RGTLDSFSSS
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE
Arabidopsis Description
At2g24550/F25P17.15 [Source:UniProtKB/TrEMBL;Acc:Q945P6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.