Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY19822 | Canola | nucleus | 92.61 | 92.21 |
CDX88142 | Canola | nucleus | 71.3 | 72.25 |
CDY55465 | Canola | nucleus | 72.61 | 71.37 |
AT5G24890.1 | Thale cress | nucleus | 72.17 | 69.17 |
CDY05394 | Canola | nucleus | 64.78 | 68.04 |
CDY05462 | Canola | nucleus | 61.3 | 65.58 |
CDY68667 | Canola | cytosol | 27.39 | 42.0 |
CDX72307 | Canola | nucleus | 37.39 | 40.19 |
CDX76805 | Canola | nucleus | 40.0 | 37.7 |
CDY45582 | Canola | nucleus | 40.43 | 36.9 |
VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 26.96 | 36.05 |
CDY13436 | Canola | nucleus | 33.48 | 35.98 |
CDY20324 | Canola | nucleus | 40.0 | 35.66 |
KRH52604 | Soybean | nucleus | 38.7 | 35.32 |
KRH61944 | Soybean | nucleus | 38.7 | 35.04 |
CDY23302 | Canola | nucleus | 33.48 | 35.0 |
CDY36435 | Canola | nucleus | 33.48 | 35.0 |
PGSC0003DMT400086234 | Potato | nucleus | 24.35 | 31.82 |
Solyc08g068970.2.1 | Tomato | nucleus | 23.48 | 30.51 |
GSMUA_Achr3P05640_001 | Banana | nucleus | 30.0 | 29.61 |
GSMUA_Achr9P13850_001 | Banana | nucleus | 28.26 | 28.89 |
KRH04949 | Soybean | extracellular, vacuole | 39.57 | 28.35 |
Zm00001d014648_P001 | Maize | nucleus | 22.17 | 28.02 |
TraesCS5D01G284800.1 | Wheat | nucleus | 30.0 | 27.94 |
Zm00001d049768_P001 | Maize | nucleus | 30.87 | 27.31 |
Zm00001d031545_P001 | Maize | nucleus | 32.17 | 27.21 |
TraesCS5B01G277200.1 | Wheat | nucleus | 29.13 | 27.13 |
Os08t0516900-01 | Rice | nucleus, plasma membrane | 30.43 | 26.82 |
GSMUA_Achr7P15940_001 | Banana | nucleus | 25.65 | 26.7 |
KXG25581 | Sorghum | nucleus | 32.17 | 26.62 |
TraesCS5A01G277500.1 | Wheat | nucleus | 28.7 | 26.29 |
EER88891 | Sorghum | nucleus | 24.35 | 25.45 |
HORVU7Hr1G052580.1 | Barley | nucleus | 30.0 | 25.18 |
Zm00001d036499_P001 | Maize | nucleus | 23.04 | 24.42 |
Zm00001d021006_P001 | Maize | nucleus | 27.39 | 24.42 |
TraesCS7A01G254500.1 | Wheat | mitochondrion, nucleus | 29.13 | 24.28 |
TraesCS7D01G253100.1 | Wheat | mitochondrion, nucleus | 28.7 | 24.0 |
Os09t0499000-01 | Rice | nucleus | 26.96 | 23.94 |
TraesCS7B01G150700.1 | Wheat | mitochondrion, nucleus | 28.7 | 23.83 |
EER99130 | Sorghum | nucleus | 25.65 | 22.96 |
TraesCS7D01G416800.1 | Wheat | nucleus | 22.17 | 22.77 |
TraesCS7B01G325100.1 | Wheat | nucleus | 22.17 | 22.57 |
TraesCS7A01G424800.1 | Wheat | nucleus | 22.17 | 22.47 |
Os06t0698748-02 | Rice | nucleus | 22.17 | 22.37 |
Zm00001d006059_P001 | Maize | nucleus | 24.78 | 21.76 |
HORVU5Hr1G075200.2 | Barley | golgi, plastid | 29.57 | 20.67 |
Protein Annotations
EnsemblPlants:CDX87106 | EnsemblPlantsGene:GSBRNA2T00146008001 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF15 | ProteinID:CDX87106 | ProteinID:CDX87106.1 |
SEG:seg | UniParc:UPI0004EE9405 | MapMan:35.2 | : | : | : |
Description
BnaC09g04210D
Coordinates
chrLK031849:+:498692..499835
Molecular Weight (calculated)
25095.2 Da
IEP (calculated)
4.118
GRAVY (calculated)
-1.007
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVMAGGPTF SIEDSEYGSD LTATMRDKAS SSSSSFDTVN DDGGGLSRVG SGIWSGQTAD YSSESSSIGT PGDSEEEEEE SDDDSSKELG LRGLASMSSL
101: EDSLPNKRGL SNHYKGKSKS FGNLGEIGSV KEVPKQENPL NKRRRLQICN KLARRSFYSW QNPKSMPLLP VNEDEDDDDD EEEGDDGDLS DEERGGIRGV
201: VIARNSSFKN RAFKSRSCFA LSDLQEEEDE
101: EDSLPNKRGL SNHYKGKSKS FGNLGEIGSV KEVPKQENPL NKRRRLQICN KLARRSFYSW QNPKSMPLLP VNEDEDDDDD EEEGDDGDLS DEERGGIRGV
201: VIARNSSFKN RAFKSRSCFA LSDLQEEEDE
001: MELMAKPTFS IEVSQYGTTD LPATEKASSS SSSFETTNEE GVEESGLSRI WSGQTADYSS DSSSIGTPGD SEEDEEESEN ENDDVSSKEL GLRGLASMSS
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
Arabidopsis Description
At5g24890 [Source:UniProtKB/TrEMBL;Acc:Q8L9W8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.