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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY19822 Canola nucleus 92.61 92.21
CDX88142 Canola nucleus 71.3 72.25
CDY55465 Canola nucleus 72.61 71.37
AT5G24890.1 Thale cress nucleus 72.17 69.17
CDY05394 Canola nucleus 64.78 68.04
CDY05462 Canola nucleus 61.3 65.58
CDY68667 Canola cytosol 27.39 42.0
CDX72307 Canola nucleus 37.39 40.19
CDX76805 Canola nucleus 40.0 37.7
CDY45582 Canola nucleus 40.43 36.9
VIT_01s0113g00410.t01 Wine grape mitochondrion, nucleus 26.96 36.05
CDY13436 Canola nucleus 33.48 35.98
CDY20324 Canola nucleus 40.0 35.66
KRH52604 Soybean nucleus 38.7 35.32
KRH61944 Soybean nucleus 38.7 35.04
CDY23302 Canola nucleus 33.48 35.0
CDY36435 Canola nucleus 33.48 35.0
PGSC0003DMT400086234 Potato nucleus 24.35 31.82
Solyc08g068970.2.1 Tomato nucleus 23.48 30.51
GSMUA_Achr3P05640_001 Banana nucleus 30.0 29.61
GSMUA_Achr9P13850_001 Banana nucleus 28.26 28.89
KRH04949 Soybean extracellular, vacuole 39.57 28.35
Zm00001d014648_P001 Maize nucleus 22.17 28.02
TraesCS5D01G284800.1 Wheat nucleus 30.0 27.94
Zm00001d049768_P001 Maize nucleus 30.87 27.31
Zm00001d031545_P001 Maize nucleus 32.17 27.21
TraesCS5B01G277200.1 Wheat nucleus 29.13 27.13
Os08t0516900-01 Rice nucleus, plasma membrane 30.43 26.82
GSMUA_Achr7P15940_001 Banana nucleus 25.65 26.7
KXG25581 Sorghum nucleus 32.17 26.62
TraesCS5A01G277500.1 Wheat nucleus 28.7 26.29
EER88891 Sorghum nucleus 24.35 25.45
HORVU7Hr1G052580.1 Barley nucleus 30.0 25.18
Zm00001d036499_P001 Maize nucleus 23.04 24.42
Zm00001d021006_P001 Maize nucleus 27.39 24.42
TraesCS7A01G254500.1 Wheat mitochondrion, nucleus 29.13 24.28
TraesCS7D01G253100.1 Wheat mitochondrion, nucleus 28.7 24.0
Os09t0499000-01 Rice nucleus 26.96 23.94
TraesCS7B01G150700.1 Wheat mitochondrion, nucleus 28.7 23.83
EER99130 Sorghum nucleus 25.65 22.96
TraesCS7D01G416800.1 Wheat nucleus 22.17 22.77
TraesCS7B01G325100.1 Wheat nucleus 22.17 22.57
TraesCS7A01G424800.1 Wheat nucleus 22.17 22.47
Os06t0698748-02 Rice nucleus 22.17 22.37
Zm00001d006059_P001 Maize nucleus 24.78 21.76
HORVU5Hr1G075200.2 Barley golgi, plastid 29.57 20.67
Protein Annotations
EnsemblPlants:CDX87106EnsemblPlantsGene:GSBRNA2T00146008001PANTHER:PTHR33172PANTHER:PTHR33172:SF15ProteinID:CDX87106ProteinID:CDX87106.1
SEG:segUniParc:UPI0004EE9405MapMan:35.2:::
Description
BnaC09g04210D
Coordinates
chrLK031849:+:498692..499835
Molecular Weight (calculated)
25095.2 Da
IEP (calculated)
4.118
GRAVY (calculated)
-1.007
Length
230 amino acids
Sequence
(BLAST)
001: MEVMAGGPTF SIEDSEYGSD LTATMRDKAS SSSSSFDTVN DDGGGLSRVG SGIWSGQTAD YSSESSSIGT PGDSEEEEEE SDDDSSKELG LRGLASMSSL
101: EDSLPNKRGL SNHYKGKSKS FGNLGEIGSV KEVPKQENPL NKRRRLQICN KLARRSFYSW QNPKSMPLLP VNEDEDDDDD EEEGDDGDLS DEERGGIRGV
201: VIARNSSFKN RAFKSRSCFA LSDLQEEEDE
Best Arabidopsis Sequence Match ( AT5G24890.1 )
(BLAST)
001: MELMAKPTFS IEVSQYGTTD LPATEKASSS SSSFETTNEE GVEESGLSRI WSGQTADYSS DSSSIGTPGD SEEDEEESEN ENDDVSSKEL GLRGLASMSS
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
Arabidopsis Description
At5g24890 [Source:UniProtKB/TrEMBL;Acc:Q8L9W8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.