Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400086234 | Potato | nucleus | 67.8 | 68.18 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 30.51 | 31.4 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 33.33 | 26.22 |
| CDY68667 | Canola | cytosol | 22.03 | 26.0 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 31.07 | 24.89 |
| Bra020475.1-P | Field mustard | nucleus | 29.94 | 24.54 |
| CDY05394 | Canola | nucleus | 29.94 | 24.2 |
| Bra024004.1-P | Field mustard | nucleus | 29.38 | 24.19 |
| CDY05462 | Canola | nucleus | 29.38 | 24.19 |
| CDY19822 | Canola | nucleus | 31.07 | 23.81 |
| Bra036527.1-P | Field mustard | nucleus | 30.51 | 23.58 |
| CDX87106 | Canola | nucleus | 30.51 | 23.48 |
| AT4G31510.1 | Thale cress | nucleus | 28.25 | 23.36 |
| CDY13436 | Canola | nucleus | 28.25 | 23.36 |
| KRH61944 | Soybean | nucleus | 33.33 | 23.23 |
| Zm00001d014648_P001 | Maize | nucleus | 23.73 | 23.08 |
| KRH52604 | Soybean | nucleus | 32.77 | 23.02 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 29.94 | 22.75 |
| CDX72307 | Canola | nucleus | 27.12 | 22.43 |
| Bra010233.1-P | Field mustard | nucleus | 27.68 | 22.27 |
| CDY36435 | Canola | nucleus | 27.68 | 22.27 |
| CDY23302 | Canola | nucleus | 27.68 | 22.27 |
| AT5G24890.1 | Thale cress | nucleus | 29.94 | 22.08 |
| Bra031516.1-P | Field mustard | nucleus | 25.42 | 21.95 |
| CDY55465 | Canola | nucleus | 28.81 | 21.79 |
| Bra009802.1-P | Field mustard | nucleus | 27.68 | 21.59 |
| CDX88142 | Canola | nucleus | 27.68 | 21.59 |
| CDY45582 | Canola | nucleus | 30.51 | 21.43 |
| Bra007841.1-P | Field mustard | nucleus | 29.38 | 21.31 |
| AT2G24550.1 | Thale cress | nucleus | 29.38 | 21.22 |
| TraesCS5A01G277500.1 | Wheat | nucleus | 29.94 | 21.12 |
| TraesCS5B01G277200.1 | Wheat | nucleus | 29.38 | 21.05 |
| TraesCS5D01G284800.1 | Wheat | nucleus | 29.38 | 21.05 |
| CDX76805 | Canola | nucleus | 28.81 | 20.9 |
| Bra032085.1-P | Field mustard | nucleus | 29.94 | 20.54 |
| TraesCS7D01G416800.1 | Wheat | nucleus | 25.99 | 20.54 |
| TraesCS7B01G325100.1 | Wheat | nucleus | 25.99 | 20.35 |
| Zm00001d021006_P001 | Maize | nucleus | 29.38 | 20.16 |
| EER99130 | Sorghum | nucleus | 28.81 | 19.84 |
| CDY20324 | Canola | nucleus | 28.81 | 19.77 |
| EER88891 | Sorghum | nucleus | 24.29 | 19.55 |
| Os08t0516900-01 | Rice | nucleus, plasma membrane | 28.81 | 19.54 |
| TraesCS7B01G150700.1 | Wheat | mitochondrion, nucleus | 30.51 | 19.49 |
| Zm00001d006059_P001 | Maize | nucleus | 28.81 | 19.47 |
| TraesCS7A01G424800.1 | Wheat | nucleus | 24.86 | 19.38 |
| TraesCS7D01G253100.1 | Wheat | mitochondrion, nucleus | 29.94 | 19.27 |
| HORVU7Hr1G052580.1 | Barley | nucleus | 29.38 | 18.98 |
| Os09t0499000-01 | Rice | nucleus | 27.68 | 18.92 |
| TraesCS7A01G254500.1 | Wheat | mitochondrion, nucleus | 29.38 | 18.84 |
| Zm00001d049768_P001 | Maize | nucleus | 27.12 | 18.46 |
| KXG25581 | Sorghum | nucleus | 28.81 | 18.35 |
| Os06t0698748-02 | Rice | nucleus | 23.16 | 17.98 |
| Zm00001d031545_P001 | Maize | nucleus | 27.12 | 17.65 |
| Zm00001d036499_P001 | Maize | nucleus | 21.47 | 17.51 |
| KRH04949 | Soybean | extracellular, vacuole | 27.68 | 15.26 |
| HORVU5Hr1G075200.2 | Barley | golgi, plastid | 27.68 | 14.89 |
Protein Annotations
| EnsemblPlants:Solyc08g068970.2.1 | EnsemblPlantsGene:Solyc08g068970.2 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF15 | SEG:seg | UniParc:UPI000276ACC0 |
| UniProt:K4CMB7 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr8:-:58063225..58064137
Molecular Weight (calculated)
19335.2 Da
IEP (calculated)
4.223
GRAVY (calculated)
-0.696
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSVQVDQNE VIVDDNDMMT NLIKKDDEIY SKSSSIGVLS HGDSGDDEDG EEAQSKGLVE EGSLNSLAAL EAALPFKRGL SGFYEGKSKT FMNLGDVKNI
101: EDVEKEESPL NKRRRLTMAT TLYKWGSSSS SSMPLLTPND GENTHNVEVE QEFKSSTSST SFNSVDSTTT TTKPFIN
101: EDVEKEESPL NKRRRLTMAT TLYKWGSSSS SSMPLLTPND GENTHNVEVE QEFKSSTSST SFNSVDSTTT TTKPFIN
001: MELMAKPTFS IEVSQYGTTD LPATEKASSS SSSFETTNEE GVEESGLSRI WSGQTADYSS DSSSIGTPGD SEEDEEESEN ENDDVSSKEL GLRGLASMSS
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
Arabidopsis Description
At5g24890 [Source:UniProtKB/TrEMBL;Acc:Q8L9W8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.