Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g005460.2.1 | |
| Solyc09g009290.2.1 | |
| Solyc09g011250.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07500.1 | Solyc05g005460.2.1 | AT1G60420.1 | 21798944 |
| AT3G07500.1 | Solyc09g011250.2.1 | AT5G02050.1 | 21798944 |
| AT3G07500.1 | Solyc09g009290.2.1 | AT5G40160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28044 | Canola | cytosol | 40.83 | 34.5 |
| CDY35937 | Canola | nucleus | 43.2 | 34.43 |
| VIT_00s0174g00120.t01 | Wine grape | nucleus | 48.52 | 32.93 |
| VIT_00s0269g00010.t01 | Wine grape | nucleus | 30.18 | 32.08 |
| AT3G07500.1 | Thale cress | nucleus | 40.83 | 31.8 |
| Solyc06g073210.2.1 | Tomato | nucleus | 31.95 | 23.28 |
| Solyc09g057880.2.1 | Tomato | nucleus | 31.36 | 20.31 |
| Solyc06g073200.2.1 | Tomato | cytosol | 12.43 | 16.8 |
Protein Annotations
| MapMan:15.5.46 | InterPro:FAR1_DNA_bnd_dom | InterPro:FHY3/FAR1 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009585 | GO:GO:0009605 |
| GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010018 | GO:GO:0042753 | GO:GO:0045893 | UniProt:K4CTH6 |
| PFAM:PF03101 | PANTHER:PTHR31669 | PANTHER:PTHR31669:SF46 | EnsemblPlantsGene:Solyc09g057870.2 | EnsemblPlants:Solyc09g057870.2.1 | UniParc:UPI000276B553 |
Description
No Description!
Coordinates
chr9:-:51563127..51565231
Molecular Weight (calculated)
19109.9 Da
IEP (calculated)
9.208
GRAVY (calculated)
-0.595
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQTSSPKEF TTNQDNATDD VGIVETSTEK EFTPNGLEVE GRSNMEPYVG MEFESEEAAK AYYSTYATHL GFIMRVDAFR RSMRNGELVW RRLVCNKEGF
101: SKSRQSQNGK KKCRAIREGC KAMIIVKKEQ SGKWLVAKLV KEHNHELVVK PVNTPKGAIL CQTPVIQGF
101: SKSRQSQNGK KKCRAIREGC KAMIIVKKEQ SGKWLVAKLV KEHNHELVVK PVNTPKGAIL CQTPVIQGF
001: MEGNSLPEED VEMMENSDVM KTVTDEASPM VEPFIGMEFE SEEAAKSFYD NYATCMGFVM RVDAFRRSMR DGTVVWRRLV CNKEGFRRSR PRRSESRKPR
101: AITREGCKAL IVVKREKSGT WLVTKFEKEH NHPLLPLSPN VRRNFQLPQT PDEKDAKIRE LSAELSRERR RCTALQQQLD MVLKEMEEHS NHLTININSV
201: IQSVRDIESN TFTKQQT
101: AITREGCKAL IVVKREKSGT WLVTKFEKEH NHPLLPLSPN VRRNFQLPQT PDEKDAKIRE LSAELSRERR RCTALQQQLD MVLKEMEEHS NHLTININSV
201: IQSVRDIESN TFTKQQT
Arabidopsis Description
Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84JA7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.