Factsheet for Solyc09g009290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g061820.2.1
Solyc03g112920.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40160.1	Solyc03g112920.1.1	AT3G48550.1	21798944
AT5G40160.1	Solyc02g061820.2.1	AT5G66055.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007012	Potato	plastid	93.06	92.19
HORVU7Hr1G028070.1	Barley	cytosol	23.03	67.59
VIT_14s0066g01750.t01	Wine grape	plastid	56.47	55.59
CDY44589	Canola	cytosol, endoplasmic reticulum, vacuole	22.08	55.56
CDY44587	Canola	plastid	54.26	54.09
AT5G40160.1	Thale cress	plastid	52.68	53.02
CDY53114	Canola	cytosol, plastid	52.68	52.68
TraesCS7A01G193000.1	Wheat	plastid	50.79	52.44
Zm00001d053962_P002	Maize	plastid	48.58	51.51
HORVU7Hr1G039330.1	Barley	plastid	50.16	51.46
KRH20044	Soybean	plastid	53.31	51.21
EES04435	Sorghum	plastid	48.27	51.17
TraesCS7B01G098300.1	Wheat	plastid	49.21	51.15
TraesCS4B01G183600.1	Wheat	plastid	48.9	50.82
Bra025602.1-P	Field mustard	plastid	51.42	50.78
TraesCS7D01G194200.1	Wheat	plastid	48.9	50.0
GSMUA_Achr9P18260_001	Banana	plastid	53.31	48.99
KRG98009	Soybean	cytosol, plastid	50.16	48.04
Solyc02g061820.2.1	Tomato	plastid	32.49	22.74

Protein Annotations

EnsemblPlants:Solyc09g009290.2.1	EnsemblPlantsGene:Solyc09g009290.2	Gene3D:1.25.40.20	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
PANTHER:PTHR45194	PFAM:PF12796	PFscan:PS50088	PFscan:PS50297	SEG:seg	SMART:SM00248
SUPFAM:SSF48403	UniParc:UPI000276C4D5	UniProt:K4CQV8	MapMan:35.1	:	:

Description

Ankyrin repeat domain-containing protein EMB506, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G40160) UniProtKB/Swiss-Prot;Acc:Q9SQK3]

Coordinates

chr9:+:2668872..2673354

Molecular Weight (calculated)

36339.8 Da

IEP (calculated)

4.922

GRAVY (calculated)

-0.616

Length

317 amino acids

Sequence
(BLAST)

001: MEKIMVLQCN SSSLFTQLWP MTVTATAYTC RFSCSNVVSH RFTRRINMGF RSFQEISTRN SVVNLRKAHF WEDPDDGSDS EEEEEEEEER EEDMDVESSF
101: EYEENRAMDN STNGLSNRED EFVKEVEQLL SPEEREILYH NQTPELDKIS TEKWNPLHTF ALAGQIRFMD RLLEEGLDID AVDKEGQTAL HHAVFGKKEA
201: VISHLLRKGA NPQVRDTDGV TPLHYAVQVG ALQTVKMLIK YKVDVNAADN VGWTPLHVAM QSRNRDIAKV LLVNGADKYR KNKDGKTPLD ISLCYGKDFK
301: SYDLAKLLKL VNANREL

Best Arabidopsis Sequence Match ( AT5G40160.1 )
(BLAST)

001: MVSSVLSIPP QTCLLPRLPI SDSVNCKSKI VYCLSTSVRG SSVKRQSTAR TRSFTETNRR TPSVQSKHEF WEDPDDGSDS ENEYEGEEED GIGNDLDNES
101: DWEDDSRVQK LTTTDNYEEE LAKEVEQLLE PEERVILQQN EKPNLKMIST KSWKPLQTLA LSMQIQLMDN LIENGLDIDD VDKDNQTALH KAIIGKKEAV
201: ISHLLRKGAN PHLQDRDGAA PIHYAVQVGA LQTVKLLFKY NVDVNVADNE GWTPLHIAVQ SRNRDITKIL LTNGADKTRR TKDGKLALDL ALCFGRDFKS
301: YDLVKLLKIM PTGDI

Arabidopsis Description

EMB506Ankyrin repeat domain-containing protein EMB506, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQK3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.