Factsheet for Solyc02g061820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g009290.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66055.1	Solyc09g009290.2.1	AT5G40160.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022381	Potato	plastid	95.14	95.35
Bra037188.1-P	Field mustard	mitochondrion	27.37	64.25
KRH76586	Soybean	extracellular	18.32	62.41
KRH16661	Soybean	cytosol, vacuole	5.96	61.36
VIT_00s0264g00130.t01	Wine grape	cytosol, plastid	55.41	52.95
KRH76587	Soybean	plastid	50.11	51.36
KRH28866	Soybean	plastid	50.11	51.13
GSMUA_Achr4P29610_001	Banana	plastid	46.14	49.76
CDY18585	Canola	plastid	46.36	49.3
AT5G66055.1	Thale cress	plastid	45.7	47.59
CDX81417	Canola	plastid	44.15	46.19
KRH28867	Soybean	plastid	42.38	45.61
OQU93284	Sorghum	plastid	43.71	45.52
Zm00001d027544_P001	Maize	plastid	42.83	45.01
Os03t0135600-01	Rice	plastid	43.05	44.22
TraesCS4D01G328600.1	Wheat	plastid	42.16	42.07
TraesCS5A01G503200.2	Wheat	plastid	42.83	41.19
TraesCS4B01G331800.1	Wheat	plastid	42.38	41.03
HORVU4Hr1G080940.1	Barley	plastid	43.27	40.75
Solyc09g009290.2.1	Tomato	plastid	22.74	32.49

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:K4B672
PFAM:PF12796	PIRSF:PIRSF000654	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248
SUPFAM:SSF48403	EnsemblPlantsGene:Solyc02g061820.2	EnsemblPlants:Solyc02g061820.2.1	UniParc:UPI0002767EBB	SEG:seg	:

Description

Ankyrin repeat domain-containing protein, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G66055) UniProtKB/Swiss-Prot;Acc:Q05753]

Coordinates

chr2:-:33345295..33349697

Molecular Weight (calculated)

51811.2 Da

IEP (calculated)

9.605

GRAVY (calculated)

-0.583

Length

453 amino acids

Sequence
(BLAST)

001: MSPTAILNPR IPNFTPFPLF KLQFLNSPPS FPIKTFRSQI PPHSLNFSLQ NNSQQTHFSR EDEEHVIGDC IVFEEGIFDD PFVQKPDNNQ NKPQNNNKKK
101: STEIQSENLI PEEWVEVQRE INITKKERRK LSQQLEFGQR AERRRLDLMP IGSNSNVRGS SIEDYLKARE EKLKQLKPLV LENPDFSKVK KDKNEKKMKK
201: KSDAELSESE EENSVLRVSS ERVLPRDPRS AVYGGGLEDI KDFFNSGIYE ANIAKSPEGP RKLFTTEEKF LLNKRHPDLV PATSEKWQPV HTLAASGEFY
301: LLTSLLKHVV DINVPDKDGL TAIHKAILGK KQAIFNFLLR ESANPFILDK DGATLMHYAV RTASTHMIKI LLLYNVDINL QDHDGWTPLH LAVQSRRTDI
401: VRLLLIKGAD KTLKNRDGLT PLDICLHSGR DIRTYELIKL LKQLPKVSLV GLT

Best Arabidopsis Sequence Match ( AT5G66055.1 )
(BLAST)

001: MQSLSTPHTI SLLLPRTSPS RLSPSLHSLA FPTRLRSLSY SSQTSILPDA GDDFIVGDCL VYEDGVFEDP YLDKEVTQVA KQERKKNRRG GAKRLDESEI
101: EPENLVPEEW RDIQAEVNLT KKDKRKIAQE MEFGVRVEKK RQGLIPLRKV DLNDFLTYKE AKLAQLRPVI LDKPGNFSDD SGASSDGETA VSSPSERVAP
201: KNPRWAVYGK GFDHVAKFFN SDKYDPSDKK SDGPRKLLSK EEKFMLNSRN PDLAVATSKK WLPLHTLAAC GEFYLVDSLL KHNLDINATD VGGLTVLHRA
301: IIGKKQAITN YLLRESANPF VLDDEGATLM HYAVQTASAP TIKLLLLYNA DINAQDRDGW TPLHVAVQAR RSDIVKLLLI KGADIEVKNK DGLTPLGLCL
401: YLGREIRTYE VMKLLKEFPL SRHKKRLVTT DEDIE

Arabidopsis Description

AKRPAT5G66055 protein [Source:UniProtKB/TrEMBL;Acc:B9DF91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.