CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 4
nucleus 1
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98009
KRH20044

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66055.1	KRG98009	AT5G40160.1	17092312
AT5G66055.1	KRH20044	AT5G40160.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16661	Soybean	cytosol, vacuole	26.32	79.55
Bra037188.1-P	Field mustard	mitochondrion	59.4	40.93
KRH28867	Soybean	plastid	75.94	23.99
GSMUA_Achr4P29610_001	Banana	plastid	62.41	19.76
KRH76587	Soybean	plastid	64.66	19.46
KRH28866	Soybean	plastid	64.66	19.37
VIT_00s0264g00130.t01	Wine grape	cytosol, plastid	68.42	19.2
CDY18585	Canola	plastid	60.9	19.01
CDX81417	Canola	plastid	60.9	18.71
AT5G66055.1	Thale cress	plastid	60.9	18.62
PGSC0003DMT400022381	Potato	plastid	62.41	18.36
Solyc02g061820.2.1	Tomato	plastid	62.41	18.32
OQU93284	Sorghum	plastid	59.4	18.16
Zm00001d027544_P001	Maize	plastid	58.65	18.1
Os03t0135600-01	Rice	plastid	58.65	17.69
KRG98009	Soybean	cytosol, plastid	42.86	17.22
TraesCS4D01G328600.1	Wheat	plastid	57.14	16.74
KRH20044	Soybean	plastid	40.6	16.36
TraesCS4B01G331800.1	Wheat	plastid	57.14	16.24
TraesCS5A01G503200.2	Wheat	plastid	57.14	16.14
HORVU4Hr1G080940.1	Barley	plastid	56.39	15.59

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100803912	MapMan:35.1	EMBL:ACUP02000626	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EMBL:BT098401	UniProt:C6TL25	EnsemblPlantsGene:GLYMA_01G161800	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	EnsemblPlants:KRH76586	ProteinID:KRH76586
ProteinID:KRH76586.1	PFAM:PF12796	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248
SUPFAM:SSF48403	SignalP:SignalP-noTM	UniParc:UPI0001B16EF0	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:49994803..49998996

Molecular Weight (calculated)

14748.1 Da

IEP (calculated)

8.483

GRAVY (calculated)

0.206

Length

133 amino acids

Sequence
(BLAST)

001: MQFFIVGAIT LVLRPLIKGK WLPQHTVAAC GELYLLDSLL KHNAVINSVD KDGLTALHKA IGKKQVITNF LLKNSANAFV RDKEGATLMH YAVQTASTET
101: IELLLLYIVE INLQDNDGWT PLNLAVQTQT KFS

Best Arabidopsis Sequence Match ( AT5G66055.2 )
(BLAST)

001: MQSLSTPHTI SLLLPRTSPS RLSPSLHSLA FPTRLRSLSY SSQTSILPDA GDDFIVGDCL VYEDGVFEDP YLDKEVTQVA KQERKKNRRG GAKRLDESEI
101: EPENLVPEEW RDIQAEVNLT KKDKRKIAQE MEFGVRVEKK RQGLIPLRKV DLNDFLTYKE AKLAQLRPVI LDKPGNFSDD SGASSDGETA VSSPSERVAP
201: KNPRWAVYGK GFDHVAKFFN SDKYDPSDKK SDGPRKLLSK EEKFMLNSRN PDLAVATSKK WLPLHTLAAC GEFYLVDSLL KHNLDINATD VGGLTVLHRA
301: IIGKKQAITN YLLRESANPF VLDDEGATLM HYAVQTASAP TIKLLLLYNA DINAQDRVG

Arabidopsis Description

AKRPAT5G66055 protein [Source:UniProtKB/TrEMBL;Acc:B9DF91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.