CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04435

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66055.1	EES04435	AT5G40160.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027544_P001	Maize	plastid	87.13	87.94
Os03t0135600-01	Rice	plastid	73.56	72.56
TraesCS4D01G328600.1	Wheat	plastid	66.9	64.1
TraesCS5A01G503200.2	Wheat	plastid	68.51	63.27
TraesCS4B01G331800.1	Wheat	plastid	67.36	62.61
HORVU4Hr1G080940.1	Barley	plastid	68.51	61.95
Bra037188.1-P	Field mustard	mitochondrion	27.36	61.66
KRH76586	Soybean	extracellular	18.16	59.4
KRH16661	Soybean	cytosol, vacuole	5.52	54.55
GSMUA_Achr4P29610_001	Banana	plastid	52.18	54.05
KRH76587	Soybean	plastid	46.67	45.93
KRH28866	Soybean	plastid	46.21	45.27
VIT_00s0264g00130.t01	Wine grape	cytosol, plastid	47.82	43.88
PGSC0003DMT400022381	Potato	plastid	45.52	43.81
Solyc02g061820.2.1	Tomato	plastid	45.52	43.71
AT5G66055.1	Thale cress	plastid	42.53	42.53
CDY18585	Canola	plastid	41.61	42.49
CDX81417	Canola	plastid	41.15	41.34
KRH28867	Soybean	plastid	39.54	40.86
EES04435	Sorghum	plastid	22.76	33.11

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	UniProt:A0A1Z5SBF9	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
EnsemblPlants:OQU93284	ProteinID:OQU93284	ProteinID:OQU93284.1	ProteinID:OQU93285.1	PFAM:PF12796	PFAM:PF13637
PIRSF:PIRSF000654	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248	EnsemblPlantsGene:SORBI_3001G513800
SUPFAM:SSF48403	UniParc:UPI0003C71498	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:78110337..78114660

Molecular Weight (calculated)

48948.5 Da

IEP (calculated)

7.140

GRAVY (calculated)

-0.499

Length

435 amino acids

Sequence
(BLAST)

001: MTPPSIFHHH HRLLPLPSAS PTQILNPFAA SSRRLNHHLP KPKVLSLPPR PVFSSAFAVA AVGDDEDVVV GDCLVFDDDA FEEQDLDILS SPPPPTSASR
101: QDWRAEAGEG ESLVPERWRD AEEEINLTKK EKRRIAHGLR FGSRLERRAP PAVAAPDEFR AYRKGMLSAE REHVAHVYRG PLERALPSEV EEPPPPEPGT
201: RVTPRNPRMG MDVGSLEDID EFFRSREYVQ DEMEDSKSPK GRHKLFSNEE KVLLNKRVPN LEAATSSKWL PLHTLAASGD FYLLDSLLKH NVDINAVDKD
301: GLPAIHKPIL SKKAAIINYL LRNSANPFIQ DKDGATLMHY AVQTACSQTI KTLLLYNVDI NRPDDCGWTP LHLAVQTQRT DIVKLLLIKG ADRTLKTQDG
401: LTPLELCLRL GHDVRAYELI KLLKSFRRQK QHDLV

Best Arabidopsis Sequence Match ( AT5G66055.1 )
(BLAST)

001: MQSLSTPHTI SLLLPRTSPS RLSPSLHSLA FPTRLRSLSY SSQTSILPDA GDDFIVGDCL VYEDGVFEDP YLDKEVTQVA KQERKKNRRG GAKRLDESEI
101: EPENLVPEEW RDIQAEVNLT KKDKRKIAQE MEFGVRVEKK RQGLIPLRKV DLNDFLTYKE AKLAQLRPVI LDKPGNFSDD SGASSDGETA VSSPSERVAP
201: KNPRWAVYGK GFDHVAKFFN SDKYDPSDKK SDGPRKLLSK EEKFMLNSRN PDLAVATSKK WLPLHTLAAC GEFYLVDSLL KHNLDINATD VGGLTVLHRA
301: IIGKKQAITN YLLRESANPF VLDDEGATLM HYAVQTASAP TIKLLLLYNA DINAQDRDGW TPLHVAVQAR RSDIVKLLLI KGADIEVKNK DGLTPLGLCL
401: YLGREIRTYE VMKLLKEFPL SRHKKRLVTT DEDIE

Arabidopsis Description

AKRPAT5G66055 protein [Source:UniProtKB/TrEMBL;Acc:B9DF91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.