Factsheet for Zm00001d027544_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d053962_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66055.1	Zm00001d053962_P002	AT5G40160.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93284	Sorghum	plastid	87.94	87.13
Zm00001d044792_P001	Maize	mitochondrion	13.46	72.5
Os03t0135600-01	Rice	plastid	72.62	70.98
TraesCS4D01G328600.1	Wheat	plastid	66.59	63.22
TraesCS5A01G503200.2	Wheat	plastid	67.52	61.78
HORVU4Hr1G080940.1	Barley	plastid	68.45	61.33
TraesCS4B01G331800.1	Wheat	plastid	66.59	61.32
Bra037188.1-P	Field mustard	mitochondrion	27.38	61.14
KRH76586	Soybean	extracellular	18.1	58.65
KRH16661	Soybean	cytosol, vacuole	5.57	54.55
GSMUA_Achr4P29610_001	Banana	plastid	52.9	54.29
KRH76587	Soybean	plastid	46.17	45.02
KRH28866	Soybean	plastid	45.71	44.37
AT5G66055.1	Thale cress	plastid	43.62	43.22
VIT_00s0264g00130.t01	Wine grape	cytosol, plastid	47.1	42.83
Solyc02g061820.2.1	Tomato	plastid	45.01	42.83
PGSC0003DMT400022381	Potato	plastid	44.78	42.7
CDY18585	Canola	plastid	41.76	42.25
CDX81417	Canola	plastid	41.53	41.34
KRH28867	Soybean	plastid	39.68	40.62
Zm00001d053962_P002	Maize	plastid	23.2	33.44

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100382432	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
UniProt:B6THC5	EMBL:EU964390	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	ProteinID:ONL93406.1	ProteinID:ONL93407.1	ProteinID:ONL93408.1	PFAM:PF13637
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI000182D897
EnsemblPlantsGene:Zm00001d027544	EnsemblPlants:Zm00001d027544_P001	EnsemblPlants:Zm00001d027544_T001	SEG:seg	:	:

Description

Ankyrin repeat protein

Coordinates

chr1:-:7978897..7991204

Molecular Weight (calculated)

48519.9 Da

IEP (calculated)

7.799

GRAVY (calculated)

-0.507

Length

431 amino acids

Sequence
(BLAST)

001: MTPPSIFHHH RCLVSLPSAS PTWTSSRRLI HQLAKPTVLS LHLRPVLSSS FAVAAVGDDE DVVVGDCLVF DDDAFEEPDL DLPSSPWPSA SASRHGRRSE
101: AGESDSLVPE RWRHAEEEIN LTKKDKRRIA HGLRFGSRLE RRAPPAVAAP DEFRAYRKGM LSAEREHVSH VYRGPLERTP PPEVKEHPPP EPEPGTRVAP
201: RNPRMGMGVG TLDDIDEFFR SREYVQDEME DSKSPKGRQK LFSNEEKILL NKRVPDLETA TSSKWLPLHT LAASGDFYLL NSLLKHNVDI NALDKDGLPA
301: IHKAILSKKA AIINYLLRNS ANPFIQDKDG ATLMHYAVQT ACSQTIKTLL LYNVDINRPD DYGWTPLHLA VQTQRTDIVK LLLIKGADRT IRTQDGLTPL
401: ELCLRLGHDV RTYELIKLLK SFRGQKQHDL V

Best Arabidopsis Sequence Match ( AT5G66055.1 )
(BLAST)

001: MQSLSTPHTI SLLLPRTSPS RLSPSLHSLA FPTRLRSLSY SSQTSILPDA GDDFIVGDCL VYEDGVFEDP YLDKEVTQVA KQERKKNRRG GAKRLDESEI
101: EPENLVPEEW RDIQAEVNLT KKDKRKIAQE MEFGVRVEKK RQGLIPLRKV DLNDFLTYKE AKLAQLRPVI LDKPGNFSDD SGASSDGETA VSSPSERVAP
201: KNPRWAVYGK GFDHVAKFFN SDKYDPSDKK SDGPRKLLSK EEKFMLNSRN PDLAVATSKK WLPLHTLAAC GEFYLVDSLL KHNLDINATD VGGLTVLHRA
301: IIGKKQAITN YLLRESANPF VLDDEGATLM HYAVQTASAP TIKLLLLYNA DINAQDRDGW TPLHVAVQAR RSDIVKLLLI KGADIEVKNK DGLTPLGLCL
401: YLGREIRTYE VMKLLKEFPL SRHKKRLVTT DEDIE

Arabidopsis Description

AKRPAT5G66055 protein [Source:UniProtKB/TrEMBL;Acc:B9DF91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.