CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98009
KRH20044

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66055.1	KRG98009	AT5G40160.1	17092312
AT5G66055.1	KRH20044	AT5G40160.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76586	Soybean	extracellular	79.55	26.32
Bra037188.1-P	Field mustard	mitochondrion	59.09	13.47
KRH28867	Soybean	plastid	72.73	7.6
GSMUA_Achr4P29610_001	Banana	plastid	61.36	6.43
KRH76587	Soybean	plastid	63.64	6.33
CDY18585	Canola	plastid	59.09	6.1
CDX81417	Canola	plastid	59.09	6.0
AT5G66055.1	Thale cress	plastid	59.09	5.98
PGSC0003DMT400022381	Potato	plastid	61.36	5.97
Solyc02g061820.2.1	Tomato	plastid	61.36	5.96
VIT_00s0264g00130.t01	Wine grape	cytosol, plastid	63.64	5.91
KRH28866	Soybean	plastid	59.09	5.86
Zm00001d027544_P001	Maize	plastid	54.55	5.57
OQU93284	Sorghum	plastid	54.55	5.52
Os03t0135600-01	Rice	plastid	54.55	5.44
TraesCS4D01G328600.1	Wheat	plastid	54.55	5.29
KRG98009	Soybean	cytosol, plastid	38.64	5.14
TraesCS4B01G331800.1	Wheat	plastid	54.55	5.13
TraesCS5A01G503200.2	Wheat	plastid	54.55	5.1
HORVU4Hr1G080940.1	Barley	plastid	54.55	4.99
KRH20044	Soybean	plastid	36.36	4.85

Protein Annotations

EMBL:ACUP02008970	EnsemblPlants:KRH16661	EnsemblPlantsGene:GLYMA_14G168800	Gene3D:1.25.40.20	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	PANTHER:PTHR45194	PFscan:PS50088	PFscan:PS50297	ProteinID:KRH16661	ProteinID:KRH16661.1
SUPFAM:SSF48403	UniParc:UPI0006EDF331	UniProt:A0A0R0GP04	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr14:+:41798531..41802357

Molecular Weight (calculated)

5053.0 Da

IEP (calculated)

3.951

GRAVY (calculated)

0.030

Length

44 amino acids

Sequence
(BLAST)

1: MHYAVQTAST ETIELLLLYI VEINLQDNDG WTPINLVQTQ TKFS

Best Arabidopsis Sequence Match ( AT5G66055.1 )
(BLAST)

001: MQSLSTPHTI SLLLPRTSPS RLSPSLHSLA FPTRLRSLSY SSQTSILPDA GDDFIVGDCL VYEDGVFEDP YLDKEVTQVA KQERKKNRRG GAKRLDESEI
101: EPENLVPEEW RDIQAEVNLT KKDKRKIAQE MEFGVRVEKK RQGLIPLRKV DLNDFLTYKE AKLAQLRPVI LDKPGNFSDD SGASSDGETA VSSPSERVAP
201: KNPRWAVYGK GFDHVAKFFN SDKYDPSDKK SDGPRKLLSK EEKFMLNSRN PDLAVATSKK WLPLHTLAAC GEFYLVDSLL KHNLDINATD VGGLTVLHRA
301: IIGKKQAITN YLLRESANPF VLDDEGATLM HYAVQTASAP TIKLLLLYNA DINAQDRDGW TPLHVAVQAR RSDIVKLLLI KGADIEVKNK DGLTPLGLCL
401: YLGREIRTYE VMKLLKEFPL SRHKKRLVTT DEDIE

Arabidopsis Description

AKRPAT5G66055 protein [Source:UniProtKB/TrEMBL;Acc:B9DF91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.