CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03966
KRH16661
KRH28866
KRH28867
KRH44616
KRH57236
KRH76586
KRH76587

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40160.1	KRH44616	AT3G21175.1	21798944
AT5G40160.1	KRH03966	AT3G48550.1	21798944
AT5G40160.1	KRH57236	AT3G48550.1	21798944
AT5G40160.1	KRH16661	AT5G66055.1	17092312
AT5G40160.1	KRH28866	AT5G66055.1	17092312
AT5G40160.1	KRH28867	AT5G66055.1	17092312
AT5G40160.1	KRH76586	AT5G66055.1	17092312
AT5G40160.1	KRH76587	AT5G66055.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98009	Soybean	cytosol, plastid	72.42	72.21
HORVU7Hr1G028070.1	Barley	cytosol	21.82	66.67
CDY44589	Canola	cytosol, endoplasmic reticulum, vacuole	22.42	58.73
VIT_14s0066g01750.t01	Wine grape	plastid	55.76	57.14
PGSC0003DMT400007012	Potato	plastid	51.82	53.44
Solyc09g009290.2.1	Tomato	plastid	51.21	53.31
AT5G40160.1	Thale cress	plastid	50.3	52.7
CDY44587	Canola	plastid	50.61	52.52
CDY53114	Canola	cytosol, plastid	50.3	52.37
Bra025602.1-P	Field mustard	plastid	50.91	52.34
TraesCS7A01G193000.1	Wheat	plastid	47.27	50.81
TraesCS7B01G098300.1	Wheat	plastid	46.36	50.16
HORVU7Hr1G039330.1	Barley	plastid	46.67	49.84
EES04435	Sorghum	plastid	45.15	49.83
Zm00001d053962_P002	Maize	plastid	44.85	49.5
TraesCS4B01G183600.1	Wheat	plastid	45.45	49.18
GSMUA_Achr9P18260_001	Banana	plastid	50.61	48.41
TraesCS7D01G194200.1	Wheat	plastid	45.45	48.39
KRH76586	Soybean	extracellular	16.36	40.6
KRH16661	Soybean	cytosol, vacuole	4.85	36.36
KRH28867	Soybean	plastid	30.91	24.23
KRH76587	Soybean	plastid	30.61	22.85
KRH28866	Soybean	plastid	30.3	22.52

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100808064	MapMan:35.1	EMBL:ACUP02008232	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:GLYMA_13G152400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1LM74
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	EnsemblPlants:KRH20044	ProteinID:KRH20044	ProteinID:KRH20044.1
PFAM:PF12796	PFAM:PF13637	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248
SUPFAM:SSF48403	UniParc:UPI00023CB9ED	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:26702247..26704848

Molecular Weight (calculated)

36959.5 Da

IEP (calculated)

4.716

GRAVY (calculated)

-0.525

Length

330 amino acids

Sequence
(BLAST)

001: MGSCATSSVL TNQFIPWSTT NTESPLDSKL GVIFYKMYRN TNKRQLSLSF AWDSYKIRSI GAIKSYKDVS YFQTEQVGSW EDPDTGSDSE CDDEEYEEVE
101: DENFGFESDS EEEGMKASVA TDVNITSGDN YEELIKKEIE QLLEPEERAI LQQNITPNLE KISTEKWSPL HTLVLSMQMS CVDKLLENGV DIDLPDKEGL
201: TALHKAITGK KEAVISHLLR RGASPHVKDK DGAAPLHYAV QVGAKMTVKL LIKYKADVNV EDNEGWTPLH IAIQSRNRDI AKILLVNGAD KTRKNKDGKT
301: ALDLSLCYGK DFKSYDLAKL LKTVPADSYL

Best Arabidopsis Sequence Match ( AT5G40160.1 )
(BLAST)

001: MVSSVLSIPP QTCLLPRLPI SDSVNCKSKI VYCLSTSVRG SSVKRQSTAR TRSFTETNRR TPSVQSKHEF WEDPDDGSDS ENEYEGEEED GIGNDLDNES
101: DWEDDSRVQK LTTTDNYEEE LAKEVEQLLE PEERVILQQN EKPNLKMIST KSWKPLQTLA LSMQIQLMDN LIENGLDIDD VDKDNQTALH KAIIGKKEAV
201: ISHLLRKGAN PHLQDRDGAA PIHYAVQVGA LQTVKLLFKY NVDVNVADNE GWTPLHIAVQ SRNRDITKIL LTNGADKTRR TKDGKLALDL ALCFGRDFKS
301: YDLVKLLKIM PTGDI

Arabidopsis Description

EMB506Ankyrin repeat domain-containing protein EMB506, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQK3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.