Factsheet for TraesCS7D01G194200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G282700.1
TraesCS2B01G300000.1
TraesCS2D01G281400.1
TraesCS4B01G331800.1
TraesCS4D01G328600.1
TraesCS5A01G503200.2
TraesCS6A01G118800.2
TraesCS6B01G146800.2
TraesCS6D01G108700.2
TraesCS7A01G423100.2
TraesCS7B01G323600.1
TraesCS7D01G416000.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40160.1	TraesCS6A01G118800.2	AT3G21175.1	21798944
AT5G40160.1	TraesCS6B01G146800.2	AT3G21175.1	21798944
AT5G40160.1	TraesCS6D01G108700.2	AT3G21175.1	21798944
AT5G40160.1	TraesCS7A01G423100.2	AT3G21175.1	21798944
AT5G40160.1	TraesCS7B01G323600.1	AT3G21175.1	21798944
AT5G40160.1	TraesCS7D01G416000.2	AT3G21175.1	21798944
AT5G40160.1	TraesCS2A01G282700.1	AT3G48550.1	21798944
AT5G40160.1	TraesCS2B01G300000.1	AT3G48550.1	21798944
AT5G40160.1	TraesCS2D01G281400.1	AT3G48550.1	21798944
AT5G40160.1	TraesCS4B01G331800.1	AT5G66055.1	17092312
AT5G40160.1	TraesCS4D01G328600.1	AT5G66055.1	17092312
AT5G40160.1	TraesCS5A01G503200.2	AT5G66055.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G193000.1	Wheat	plastid	95.81	96.74
TraesCS7B01G098300.1	Wheat	plastid	87.42	88.85
TraesCS4B01G183600.1	Wheat	plastid	87.1	88.52
HORVU7Hr1G028070.1	Barley	cytosol	30.32	87.04
HORVU7Hr1G039330.1	Barley	plastid	85.81	86.08
EES04435	Sorghum	plastid	68.39	70.9
Zm00001d053962_P002	Maize	plastid	67.1	69.57
CDY44589	Canola	cytosol, endoplasmic reticulum, vacuole	25.48	62.7
CDY44587	Canola	plastid	52.9	51.57
VIT_14s0066g01750.t01	Wine grape	plastid	53.55	51.55
CDY53114	Canola	cytosol, plastid	52.58	51.42
Bra025602.1-P	Field mustard	plastid	51.29	49.53
PGSC0003DMT400007012	Potato	plastid	50.97	49.38
AT5G40160.1	Thale cress	plastid	50.0	49.21
Solyc09g009290.2.1	Tomato	plastid	50.0	48.9
KRG98009	Soybean	cytosol, plastid	50.0	46.83
GSMUA_Achr9P18260_001	Banana	plastid	50.97	45.8
KRH20044	Soybean	plastid	48.39	45.45
TraesCS4D01G328600.1	Wheat	plastid	33.87	23.13

Protein Annotations

EnsemblPlants:TraesCS7D01G194200.1	EnsemblPlantsGene:TraesCS7D01G194200	Gene3D:1.25.40.20	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
PANTHER:PTHR45194	PFAM:PF00023	PFAM:PF12796	PFscan:PS50088	PFscan:PS50297	SEG:seg
SMART:SM00248	SUPFAM:SSF48403	TIGR:cd00204	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr7D:-:150936494..150938711

Molecular Weight (calculated)

33775.2 Da

IEP (calculated)

7.348

GRAVY (calculated)

-0.335

Length

310 amino acids

Sequence
(BLAST)

001: MLPWAATASS SSAAAAAAAA LLHASPLPAS HRAALPRYRP SPSLPPPLSV AFRSPARALP RGGDAFWEEP DDGSGGDYED DGKQATGQRS SPFPPPFPLS
101: RLVATRQQER QEQDLRREIE LLLTPEEEAI LDQNETADVT KISSPKWHPL HTYALALQIP LMDKLLDNGV DIDLVDKDGF TPLHKVIIGK KEAVISHLLR
201: KGANPHVTDR DGATPLHYAV QVGALQTVKL LIKYRVDVNV ADVDGWTPLH LAVQSRNRDI TKILLVNGAD QTRRTNGGKT PLDLSLCFGR DFNSYDLAKL
301: LKLVPANRGV

Best Arabidopsis Sequence Match ( AT5G40160.1 )
(BLAST)

001: MVSSVLSIPP QTCLLPRLPI SDSVNCKSKI VYCLSTSVRG SSVKRQSTAR TRSFTETNRR TPSVQSKHEF WEDPDDGSDS ENEYEGEEED GIGNDLDNES
101: DWEDDSRVQK LTTTDNYEEE LAKEVEQLLE PEERVILQQN EKPNLKMIST KSWKPLQTLA LSMQIQLMDN LIENGLDIDD VDKDNQTALH KAIIGKKEAV
201: ISHLLRKGAN PHLQDRDGAA PIHYAVQVGA LQTVKLLFKY NVDVNVADNE GWTPLHIAVQ SRNRDITKIL LTNGADKTRR TKDGKLALDL ALCFGRDFKS
301: YDLVKLLKIM PTGDI

Arabidopsis Description

EMB506Ankyrin repeat domain-containing protein EMB506, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQK3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.